XLOC_010069 (fhl3a)


Basic Information

Item Value
gene id XLOC_010069
gene name fhl3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33655890 ~ 33736831 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020012
TGCAGACAAGAAGTCACTGGATAACGAAGCAAACTCAATTTAAGACTTATTGAATGAAACTTTGTTCGAAAAGAAGGAAGACCGTTTTCATCCACTGGGGCGGGAGCTTGTGACTCACTCAACTTCCTCTATAGTAGCGCATGGAAGAGTTGAGCGCGAGCATTTCTCTCATTCGGTGCTTTGAGGGAGAGCCGGACACTTCTGCAGGACTACACATCTGCTGACCAGGCCAACTTAACTGACCCGACTAGGACAGAGTACTGAAGGAGTTTTGACTGGGGACTGAACTCGGGATCAGGAGCAACATGAGCGAGCGTTTCGACTGCGACAACTGTAAGGAGTCTTTATATGGCAGAAAGTACATCCAGGCGGAGGAAAACCCTTACTGCATCCCCTGCTACGACAGTCTGTTCGCTAACACCTGCGACGAATGCAAAGAGCTGATTGGACACGATTCAAGAGAGCTCTTTTATGAGGACCGTCATTACCACGAGCACTGCTTTCGTTGTTTCCGCTGTGACCGTTCGCTGGCAGACGAGCCTTTTACCAGTCAGGATGATGCCCTATTGTGCAACGACTGCTACTGCAATGAGTTTTCCTCCAAATGTGTGGCCTGTGATAAAACCGTCATGCCTGGAACCAGGAAGCTCGAGTATGCCGGCTCCACATGGCATGAGGGCTGTTTCATTTGCAACAGCTGTCAACAGCCAATAGGCTCCAAGTCCTTCATCCCAGATAAAGATGACCACTATTGCGTACCCTGCTATGAGAACAAGTTCGCACCACGCTGTACTCGATGTAAACAGGCCTTGGCTAAAGGTGGTGTGACCTATAGGGATGAGCCGTGGCATAAGGAGTGCTTTGTGTGCACAAGCTGTAAAGTCCAGCTAGCTGGCCAGCACTTCACCTCTCGTGATGACAGCCCATACTGCATCAAATGCTTCGGAAATCTGTATGCTAAGAAGTGTGAAGCCTGCAATAAACCAATTACAGGTTTTGGCGGGGGAAAGTACATCTCGTTTGAGGACCGGCAATGGCACCAGCCGTGCTTCACCTGCTCTCGATGCTCTGTCTCTCTGGTGGGAGCAGGCTTCTTCCCCGAGCAAGATGAGATCCTCTGTCGCAACTGCAACAGCACCCTATAGAATACAACCCTCATGCACATGCCTTACCTTcctttacacatgcacacacacacactattatacACTGCTGTGCCCTCACCCAAGAACTACCCATTTCAAGTAACGCCCATGCTGATACTGCTATTTAACATAACAGCAAACCAGCAATCTACCCCTCGCACAATCATCACAACCCTCAACATACACTTGCTGGTTTACAACTGGACAAACAAGACTTGATGCTTCCTATGCAACGCTGAGTTCAAATCCACCGCACAATCCAGTATCAACACTCCATTAATGTACAGGCCTCGATGCACAGATAAAAATATCTGATCTGCCTACTAGTTATCGCCTTCTTTATTTTTGCCGGCCAGTCAGAACTGTTATTAAGCTGGTAGTAGTCATTAATGGGTGGATGTAGTCTGTGTTTGCAGCCTGTAAAAGAACTCAAACAGATTCCTTCAGAAACACCCAAAGGTCAAAGGTTTGGTGTTCTGTTAAAGTGACCGAACATCCCATTTAGAATTGTTCCAAACACTCTGTGCCAAGCAAAGTGGTTAGAACGGCAATGAATGCATGATAGATGGTGAGTTTTGGGTAAAATAAAAGTCATACGCCCAAAGCTGAAGCATTTACACACCATATAAGTCACATAAATGCGTGACTGTTGAATGCTGTAGTTAGTGAGCACTTTTGTTTTCTAAAACTTTAGATTTCCTTAGCAGAACTTGCATTGCACATGCATTCAATTGAGTGGAGAGTCTTCCAAAATGCATAGCAATGTCAGATAAAAGAACTGCTGAAATAATTCTGCAGTCCAGAGATGCGTGGGAAGATGAAGTTTGAATTTTGTATACAGGTGGAAGACAAATAGACTTGCATTTGCACTACTATAGCTTGAATTATCTATAGAAGCACAGAAACTTCTACAAAGATACAGCACGCATTACACTGTATATATACTAACTACATATTAGTccacttcctgttttttttttaattgtttgatcATTAATTTGTCTAGTCAGACTTTCTTAAATCTTTATAAACATGTCTGTGTTATGAGTGAATGCAATTAAACCATACTTGTGTCAGTATGTCAAACGGCAGTATGCATGTGGTCAAGTGAGACGATAAGTATTCATATTTTGTTGATGCCAATTTTACTTGTTTCACCatctaaatagttttaaatgtacaagtatatatatattcactttaaGCTTTAATGCAAGAGAGAAAAAGTTGCCTAATTTGCATtcttaattaaaaactaattcaAGCTTTGTAAGTTTGaggtgtgtttaaaaaaataataattaaaaactgtttattgttttttttgttgataaATACTTGATAAATTAA
>TCONS_00020013
AGCTGCCACGTCACACACAGAATAGAGTCGTGTGCTGAAATTCCAGCTTCCTCCCTCTCATTTCCCAGCTATCATCACAGAGCAATAAAACTTAATAGTCACTTTGCCTCATGATGGCTCTGCCTGTGTTTGCTAGTTTGTCTTTCCCTGTGATTGAAGGCTCTCACCTATTGTGTTACAGGGACTGAACTCGGGATCAGGAGCAACATGAGCGAGCGTTTCGACTGCGACAACTGTAAGGAGTCTTTATATGGCAGAAAGTACATCCAGGCGGAGGAAAACCCTTACTGCATCCCCTGCTACGACAGTCTGTTCGCTAACACCTGCGACGAATGCAAAGAGCTGATTGGACACGATTCAAGAGAACCAGGAAGCTCGAGTATGCCGGCTCCACATGGCATGAGGGCTGTTTCATTTGCAACAGCTGTCAACAGCCAATAGGCTCCAAGTCCTTCATCCCAGATAAAGATGACCACTATTGCGTACCCTGCTATGAGAACAAGTTCGCACCACGCTGTACTCGATGTAAACAGGCCTTGGCTAAAGGTGGTGTGACCTATAGGGATGAGCCGTGGCATAAGGAGTGCTTTGTGTGCACAAGCTGTAAAGTCCAGCTAGCTGGCCAGCACTTCACCTCTCGTGATGACAGCCCATACTGCATCAAATGCTTCGGAAATCTGTATGCTAAGAAGTGTGAAGCCTGCAATAAACCAATTACAGGT

Function

symbol description
fhl3a Predicted to enable actin binding activity and transcription coregulator activity. Predicted to be involved in actin cytoskeleton organization. Predicted to be active in Z disc; nucleus; and stress fiber. Orthologous to human FHL3 (four and a half LIM domains 3).

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0001725 stress fiber cellular_component
GO:0005634 nucleus cellular_component
GO:0030018 Z disc cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4741 Predicted to enable actin binding activity and transcription coregulator activity. Predicted to be involved in actin cytoskeleton organization. Predicted to be active in Z disc; nucleus; and stress fiber. Orthologous to human FHL3 (four and a half LIM domains 3).

Ensembl:

ensembl_id ENSDARG00000034643

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020012 False 2495 mRNA 0.42 6 33655890 33736831
TCONS_00020013 True 722 nonsense_mediated_decay 0.49 3 33719969 33733378

Neighbor

gene id symbol gene type direction distance location
XLOC_010068 pou3f1 coding upstream 59905 33593116 ~ 33595985 (+)
XLOC_010067 AL954832.1 coding upstream 312625 33343151 ~ 33343265 (+)
XLOC_010066 NA coding upstream 362110 33250490 ~ 33293780 (+)
XLOC_010065 NA coding upstream 441353 33180106 ~ 33214537 (+)
XLOC_010064 rragca coding upstream 476771 33163858 ~ 33179119 (+)
XLOC_010070 BX530064.2 coding downstream 15271 33752102 ~ 33756379 (+)
XLOC_010071 gnl2 coding downstream 165175 33902006 ~ 33925877 (+)
XLOC_010072 snip1 coding downstream 194033 33930864 ~ 33937924 (+)
XLOC_010073 gpn2 coding downstream 201396 33938227 ~ 33943728 (+)
XLOC_010074 arid1aa coding downstream 216813 33953644 ~ 33986796 (+)
XLOC_010060 NA non-coding upstream 592731 33058899 ~ 33063159 (+)
XLOC_010055 CR848729.4 non-coding upstream 982954 32672820 ~ 32672936 (+)
XLOC_010080 NA non-coding downstream 578931 34315762 ~ 34321379 (+)
XLOC_010081 NA non-coding downstream 583058 34319889 ~ 34323007 (+)
XLOC_010082 NA non-coding downstream 742166 34478997 ~ 34502203 (+)
XLOC_010085 AL929184.1 non-coding downstream 987737 34724568 ~ 34724682 (+)

Expression


Co-expression Network