XLOC_010075 (pigv)


Basic Information

Item Value
gene id XLOC_010075
gene name pigv
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33987892 ~ 33990724 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020023
CTATCGTTCGTGTCTGTGTTAATGCAATGAATTGTAAAAACGTGAATATAATAATTCCTTGAATTGTTATTCATCTGCGGACCCGATGTTTTTATGGTGGATAGAAACTCCAAGGAAGAACGCAAATTTCAGCTTTGGTTAATGTCAATGATGCCTCTACCATCCTACACGCTAATCCATTTAGAATAATACAGCGTTCAGCAAATGTCCTGTTGTCATTGTCCTCAATTAAAGTTGTCAAGTATGactctatttaacaaaaatgaagACATACAGACTGTTCTACGCTGTGCAACGTTTACACGACTCATTTCGCTATTCCTACAGGCTGTCCTGAATGTAGTGATTCCTGACCATGTGGCCGATGCCTTCAGTCCTCCTCGTTCGGAAGCCCCTCTCCTGCTCGACCCTCTCATTGAAGCATTATTTGGTGGCCTTAGTCACTGGGATGCAGAGCATTTCCTCTTCATCGCAGAGCGTGGTTACATATATGAACACAACTttgctttctttcctctgttTCCTTTCATCCTACGATTACTTGCATCCACATTGCTATGGCCATTGTGTGGATTTCTCACAATGCGTGGCCGGTTAATCATAACTGTGGTTATAGGGAATAGTTTCCTCTTTGTCTTAAGTGCAGTGGCTCTATATAGTCTGAGTCGAATAGTGCTACAAGAAAGAAAGCTTGCATTTGTTGCAGTCATGATGTACTGTTTGACACCAGCTAATGTGTTTATGCTAGCAGGCTACTCGGAGACACTCTTTGCAACTCTTACTTTTGCAGGCCTCTGGATGCTTGAGAGAAGATACACAGTTGGAGCTTGCCTCCTGTTTGGCTTTGCTACTGGCGCTCGAGCCAATGGGCTTGTGAATGTTGGGTTTTTGCTGTATCTCACGCTTCAGCGGTGTTTAGCTCGTGCTCGTGCTTTTAATAAAGTAGCTGAGGGCGTTCAATATCACAATTATATTTGGGAACTTGTTCGATTTGCCTTCACAGGAGCAGTTTACGCAGCCCTTGTTGCTCTTCCGTTTGGTCTCTTTCAGTTTTATGGCTTTCAAACATTTTGCCATCCAACTTCAAACCAAATTCCTCCTGCGCTGGTTAATTTAGCTCAGCACAAAGGATATCGTGTGGCTGACGCAGCATCTCCAAAACCAAAATGGTGCCATTGGCAGATTCCACTTTTATATTCGTATATACAGGATGTTTATTGggatgtgggtttccttcgatACTTCCAGTGGAAGCAGATACCCAACTTTATTTTGGCATTGCCTGTTGCAACTCTGGGATTTAAAGCCTTGTTTATATACATTACAGATAACCCAGTGTTTTGTATGTATTTGGGGTTGGGAGAGAAAGGAAATAGCAAGAAGATTTATGGGTTTTGTAACCCAAGAGTCTTTGTTTATATTGTGCACAATACCGTCTTGCTTCTGTTTGGGATATTCTGCATGCACGTGCAGGTTTTGACTCGGTTTCTTGCTTCCTCTTCACCTGTGTTATACTGGGTCTCTGGCCACCTGCTTTTTAAATATGAACCTCTGCTGAAAGAAGAAAAGCTCTTCCGATCAGACCAAACTCAACAGAAGAAGAATCACAAACCTGGCTTGAGATGTTTTGCAGGGATGTGGAGAAATAATCCGGTCTTTTACCTATTGATGCACTGGAAGACTTGCTCTATTTATACGCAATGCATCTTGGGCTATTTCATATCGTATTGGTTTTTAGGTCTGGCTCTGCATTGTAACTTCCTTCCCTGGACATAATAATGTGAAAATGATTTCAGTCTTTATAATATTCCTGAGGCCTTTTAAATAATATGCTACTCGAGCAGTTTGTTTgcaattaatgtatttttttgtacttCTTAGGAagcttaaatatatttttatatttatttaatattgaatAAATGTCCTTATTGGATGATTT

Function

symbol description
pigv Predicted to enable mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of mannosyltransferase complex. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human PIGV (phosphatidylinositol glycan anchor biosynthesis class V).

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0031501 mannosyltransferase complex cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000030 mannosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-121116-1 Predicted to enable mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of mannosyltransferase complex. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human PIGV (phosphatidylinositol glycan anchor biosynthesis class V).

Ensembl:

ensembl_id ENSDARG00000101952

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020023 True 1942 mRNA 0.41 3 33987892 33990724

Neighbor

gene id symbol gene type direction distance location
XLOC_010074 arid1aa coding upstream 1096 33953644 ~ 33986796 (+)
XLOC_010073 gpn2 coding upstream 44164 33938227 ~ 33943728 (+)
XLOC_010072 snip1 coding upstream 49968 33930864 ~ 33937924 (+)
XLOC_010071 gnl2 coding upstream 62015 33902006 ~ 33925877 (+)
XLOC_010070 BX530064.2 coding upstream 231513 33752102 ~ 33756379 (+)
XLOC_010076 zdhhc18a coding downstream 1595 33992319 ~ 34006335 (+)
XLOC_010077 tent5ba coding downstream 56009 34046733 ~ 34056443 (+)
XLOC_010078 tcea3 coding downstream 121195 34111919 ~ 34135244 (+)
XLOC_010079 oprd1b coding downstream 170111 34160835 ~ 34174260 (+)
XLOC_010080 NA coding downstream 325038 34315762 ~ 34321379 (+)
XLOC_010067 AL954832.1 non-coding upstream 644627 33343151 ~ 33343265 (+)
XLOC_010066 NA non-coding upstream 694112 33250490 ~ 33293780 (+)
XLOC_010065 NA non-coding upstream 773355 33180106 ~ 33214537 (+)
XLOC_010060 NA non-coding upstream 924733 33058899 ~ 33063159 (+)
XLOC_010081 NA non-coding downstream 329165 34319889 ~ 34323007 (+)
XLOC_010082 NA non-coding downstream 488273 34478997 ~ 34502203 (+)
XLOC_010085 AL929184.1 non-coding downstream 733844 34724568 ~ 34724682 (+)
XLOC_010086 NA non-coding downstream 922560 34913284 ~ 34916253 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_10580514_10590458 ZDHHC18A coding CI01000027 null 10580191 ~ 10590903 (+)