XLOC_010077 (tent5ba)


Basic Information

Item Value
gene id XLOC_010077
gene name tent5ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34046733 ~ 34056443 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020027
ACTGTATCATTTCACCTTCTCAGTTGGATGTGCATGAATTGGAAATAGTGAATCAGGAGCGCAACTGGATGACCTCACGAACCGCGTCCATTTATAGGCTATATATCTGATAAAGAGAGCAACTGTGTAACAACTCAGCTTTTCACATTTCGGATCTGCGTAGGAAGTTCATCTGCTGGAAAGAGAGCGACATCTGCGCGGAAGACGAACAGaagtttttgagatttttttttaaagctggttGTTCTTTCCATCGCCATGTCCTCCGGTGATGCGACAGAGCAGTGTCGGCGGTTTTGTGTGTTGTCTTGGGAGCAGGTGCAACGTTTGGACTCTATTCTCGGAGAGACGGTTCCAGTTCACGGACGTGGAAACTTCCCGACGCTTTCGGTGCAGCCGCGACAGATTGTTCAGGTGGTTCGAGCACGTTTGGAAGAGCGAGGAATCACGGTTCGAGATGTTAGGCTGAACGGTTCAGCTGCCAGTCACGTTCTGCACCAGGACACGGGCCTCGGATACAAAGACTTGGACCTGATTTTTGGTGTTTCTCTGTCAGATGACCAGGCTTTCCGTGTGGTGAAGGACGTGGTTCTCGACAGCCTGCTGGACTTCCTACCTGAAGGCGTCAGCAAAGAGCGAATCTCAGCACTGACTCTGAAAGAGGCTTACGTGCAGAAACTGGTGAAGGTGTGCAACGACACCGACCGCTGGAGCCTCATCTCGCTTTCCAATAACACAGGCAAGAACGTCGAGCTCAAGTTCGTGGACTCTCTAAGACGGCAGTTTGAGTTCAGCGTGGACTCCTTCCAGATTGTTTTGGACTCTCTTCTTCTGTTCGACCGTTGTTCGGAGACGCCCATGTCGGAGTGTTTCCACCCTACAGTTTTGGGCGAGAGTATGTATGGGAACTTCGAGGAAGCTCTTGGCCATCTGTGCAACAAGGCCATCGCTACACGAAACCCTGAAGAAATTCGCGGAGGCGGCCTCTTAAAATACTGCCACCTTTTAGTGCGAGGATTCCGTCCCACTTCCGAATCGGAGATGAAATCGCTCCAGCGGTACATGTGCTCTCGGTTCTTCATTGACTTTCCAGACATCGGGGAGCAGCAGCGAAAACTGGAGGCGTACCTACAGAATCACTTTGCCGGAATGGAGCACAAACGGTATGACTGTTTGGTCACGTTGTACCACGTGGTCAATGAGAGTACTGTATGCTTAATGGGACACGAGCGACGGCAGACTTTAAACCTTATCTCAATGCTGGCGCTAAGGGTGCTCGCCGAACAGAACGCCATCCCTACAGTTACCAACGTCACATGTTATTACCAGCCGGCACCGTACGTGCGAGACATCAACTTCAGTAACTACTACATTGCTCACGTGCAGCCGCTGGTTCACACTTGCAGTAGTTCCTATCCGACATGGCTGCCCTGTAACTGACACAGTCGACATCCGTTCTCGTACATCCCCATGTGCTGGAGATGATATGCAAGCAAGTGAATATAAAACGTTTTTTCCAAACTCAAAAAAAGGGATTTTCTGGAggagcttttatttttttaaacaatgtcaaTAGAGCATTCTTGGGACAGCGTCAAAATTGGGAAGACTTATTCTCACCACTGGTTACCTTCTCATTCTTTAAATGCTTTGTATGACAATGTCACAGCCAAACATTAGAGATGCTCCGATCGATCGGCCTAAGATTCAATCGGTACTCCCCAATCTGGGAGATCTCATGAAACGATCGCAGGTGTTGGTTTATGAGTTTACAATCAGAGGAAGACGCACGTGCACACCCGTATATTATACATGGCCTACAGCAGACACAACACAATGAGAAGGTAAACGATGAATGTGGCGATCGATGTGCTCGCGTCACAGCAGCTAAAATACAGATGTGGTGCGACCCGTTTATACAGTCTATTGGCTGTTTATATATGGGGCCAGATCAGTCTcaacaataatatatttacaaaataaagatcatacaacacaattcacatttacaaaatccaattcatgAATACAGAAcaagattcaaaaatacacaaatttaatttattaatttaaaacatgattcaaaaatagacaaatcaaatttgaaaattcaaaagacatttaaaaattacacaaatccaattgtaaatttaaaaaaatacaaaaatcaaatttgtaaaaataaaaaagaaacaaaatgcagatttaatttataaatttaaaacatgattccaaaattcacaaatccaattcgtaaattcaaaattacacaaatccaattcgtaaattaaaaaaaagataaaaaaacacaaatcaaaattgtaaatataaaaaaatgattttaaaaaatgcaaatttaattcgtaaattcaaagcaAGATTcagaaatgcataaaaacaattagtaaattcaaaacatgatttaaaaatacacaaatccaattcgtaagttcaaaacaccattcataaacacaaatctaattcatttgGCGaaaatttttatgatttttttttgtgaattcatAAATTGTGTTTACAGAtgtacaaattggattttgtaaatgtgaattgtgctgtgcatgtaggAATTTATACAGTCTAAAACTGCTTCTGGCCTtgacatgttcacacctaaatggtAACAAAAGACATGTTTAAGGttttatatgcagcatccttcatttattttcttaggtACGGCGAGATCTACTCTTAAGCTTCAtgcttagagggaaaatgtgctcaaTGCATTATAAAGCATTAGATTCGGTATTCAGTATCGGCTCATGACAAGTAATCGGTACTCGATATCGGCTGTGAAAATcttgatcagagcatccctaccAAAAATATAAGtcatttgaattaaattatttttgataatatGTGTGCAGTTTACATAGTTCAAGTTTTGTTGAGGTGTTTACCTATTAattaaaataccccacaaatatataaaagaaaactgATTTATGGATTTAATTTGTCTTCCGGGTTTTGATGCCTCGACTGTAGCACTCTATTGTTCTTGTGCTAAATGTGACATATATTAGAATGACTGTTCACTGCTGTATGTCTGATTTGAGCCTATTCTTACGTATTCTGTTCTGCAGAGTGAGCGAAGATCTTTTTCACATGTAGcaggaaaaaaaatacactttgtttttttttctctctctcaagtCATGATAGATTCACTTAAACTGTTGCAGGTTATGTAAGCGGGGAGAGAAAGCTGCGTTCTGTGTTGTGaagctatatatgttttttttcagaCTGTGGTTTCAATCAACCtctatttttcttgttttttttttttttaaggaccaAAGATATTTTATTTTCGTCGTTAAAAAAGGAATGTTTGCTGTTGTAATTCCAAGTGcctaaaaacattatataaaaaagtGAGACCTGTGCTctctaaaaaaca

Function

symbol description
tent5ba Predicted to enable RNA adenylyltransferase activity. Predicted to be involved in mRNA stabilization. Is expressed in several structures, including ectoderm; epidermis; hatching gland; polster; and yolk syncytial layer. Orthologous to human TENT5B (terminal nucleotidyltransferase 5B).

GO:

id name namespace
GO:0048255 mRNA stabilization biological_process
GO:0005575 cellular_component cellular_component
GO:1990817 RNA adenylyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061110-129 Predicted to enable RNA adenylyltransferase activity. Predicted to be involved in mRNA stabilization. Is expressed in several structures, including ectoderm; epidermis; hatching gland; polster; and yolk syncytial layer. Orthologous to human TENT5B (terminal nucleotidyltransferase 5B).

Ensembl:

ensembl_id ENSDARG00000039943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020027 True 3433 mRNA 0.40 2 34046733 34056443

Neighbor

gene id symbol gene type direction distance location
XLOC_010076 zdhhc18a coding upstream 40398 33992319 ~ 34006335 (+)
XLOC_010075 pigv coding upstream 56009 33987892 ~ 33990724 (+)
XLOC_010074 arid1aa coding upstream 59937 33953644 ~ 33986796 (+)
XLOC_010073 gpn2 coding upstream 103005 33938227 ~ 33943728 (+)
XLOC_010072 snip1 coding upstream 108809 33930864 ~ 33937924 (+)
XLOC_010078 tcea3 coding downstream 55476 34111919 ~ 34135244 (+)
XLOC_010079 oprd1b coding downstream 104392 34160835 ~ 34174260 (+)
XLOC_010080 NA coding downstream 259319 34315762 ~ 34321379 (+)
XLOC_010081 NA coding downstream 263446 34319889 ~ 34323007 (+)
XLOC_010082 NA coding downstream 422554 34478997 ~ 34502203 (+)
XLOC_010070 BX530064.2 non-coding upstream 290354 33752102 ~ 33756379 (+)
XLOC_010067 AL954832.1 non-coding upstream 703468 33343151 ~ 33343265 (+)
XLOC_010066 NA non-coding upstream 752953 33250490 ~ 33293780 (+)
XLOC_010065 NA non-coding upstream 832196 33180106 ~ 33214537 (+)
XLOC_010060 NA non-coding upstream 983574 33058899 ~ 33063159 (+)
XLOC_010085 AL929184.1 non-coding downstream 668125 34724568 ~ 34724682 (+)
XLOC_010086 NA non-coding downstream 856841 34913284 ~ 34916253 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_10609852_10616902 FAM46B, FAM46A, FAM46BA, FAM46BB coding CI01000027 null 10609852 ~ 10617522 (+)