XLOC_010088 (si:dkey-34d22.1)


Basic Information

Item Value
gene id XLOC_010088
gene name si:dkey-34d22.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35343493 ~ 35379565 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020040
TATCACTAGGGGTCAGTATAAGCTCATTATTTCACTCAAATTCACTCATGAGtatttcaccaaaaatgaaaatatgatttGCTAGCCTACCATGACTTAAATTATGTCTGTAGCGTAGTTCAGAAACACTACAGTGTTaattataaattactttttttcatGTGGGATTTACGTTagtgttgtgtgtgaaaatacCTGCTGATAGACATTCAGAAGATTTCAGCGCATTTAAAACTTCCACAGAGTAGGCTAGCCGGTTTCATTATAGTGCGTTGTAATTTTGTAACCACGAAAACGTCTCAACTTCCGTATTACATTATTTGCAGGGTTATCCATGCttgttgttaataatattgactagaAAAAAGCGGGACGTCTCACTCCATACCAGCCAAGCACTGAAAGGGAATTGTAAATAAGTTGACTAGCACGTCCTGAGGCCAATAAAAGTAGCGTACATTAACCCATGCCCAGTTGGGGATGGGCTACACTTTGCAGCCTTAATAGCATGAGAAGTGCGAGAGACTAGATTGTAATTACGACATGAAGTAAAACTCATGAACGAGTCCGCGAAGGGAAGGAGGAATCCCGCAGGAAAACATGCATGCCAGTTATGGAGCTCTTTGGAATACTGTGGAATTTTTTCGGGTTTGGCTTATTCTCAGCATCGAAGCACTGGTCTTGGTATACGGCCAAAAGGGCGATGGGTGTGGACACACAGTCCTCGGTCCCAGCAGTGGCACACTGACCTCGCTGAACTTCCCAGGAACCTACCCCAACCACACCCAGTGTGAATGGACTTTAAAGGTAGCGAAGGGCCAGACGCTGCTCTTGACCTTTGGGGATTTTGACTTGGAGAGGAGCCAAGACTGCATATCTGGCTCTCTCACCATCACAGACAGCAGTGGAGCCACCAGAGTGGGTCCTTTGTGTGGGCAGTTGTCGACCACAAACAGGAACATATCTGTGAGTACCAATGAAATAACAGTGCATTTCATCTCAGGCACTCACCGATCAGGACGGGGCTTCGTCATGTCTTATTCAACCAATCAGCACTCAGAACTCATTTCATGCCTGCATCGAGGGACGCATTTCTCCTCCCAGCAGATCAGTGCGTTCTGTCCTGCAGGCTGCAGAGGGGTTGCAGGAGAAATCTGGGGCTGGCATGGACAGGGATACCGTGATACATCAGTGTTATGTAAAGCTGCGGTCCATGCAGGGGTGATTTCAGACAGTTTGGGCGGCATGATCAATGTGTCTCTGCAGAGGGGCATTACCTTGTACGAGTCGAACTTCGCTAACGGAGTACTATCAAAAACCGGATCCTTATCAGACAAACGAGTTGTCTTCTTTAAAGAGTGTAATAGGGAGCTGATGGTGATGGCCTATAACACCTCTTCAGTTTGGGACGAGGTCAACAGGCTGGGCCAGAAGGTATCCTGGTCTCCGGAGCTCGACGGCTCTCAGTGGGCTGCCAGCTCTGCAGATCAGCAACCTTGGATGGAAGTCGAGCTCTGGAACAGGAGTACGGTCACAGGCATCATAACAAAGGGTACGCCACATTACTACATTGAATCTTACACCATCATGTACAGCAAAGACCGCAAAACCTGGAAGGCCTACAAAGCAGCGTCAAGCAAAGACAAGAAGGTGTTTGAGGCCCACTCTGATGGTCACGTGATGGTCCTCAACAGTCTAATTCCTCCAGTCATTGCCCGATACCTCTTGCTAAAACCCCAGAAGTGGCACATCAGGGCGTCTGCACAGGTTCAAGTGCTGGGCTGCCCTTCTGCCGCCCTCAGACCCCGTTCCCAAGGAGACGAGCTGAACACTAGGAAGGCAGTTGTCACAGAGACTTTGTCCATAGACACACTGCCCACCGAGAGCCCTGTGATCAAAAGAAGCTCAGGCCCCAGTCAAGCTGTGATATTAGTAGCGGGCATGGTTTTAGGAGCCGCTCTTTGTGTTGGTTGTCTTTTAGCTGGGCTTATTTTGTGGAGAAGaaaaagaaattcacaacTAAAGAAATGCTGTGTTGACCAAGGCTGTCAGGGTTTCCACGGGACGGCGAAGCTTCCATCCATAAACCCAGAGCTCGTCTCGTACCCTTTGGTCCGAAACATCCACGATGCTCTCCCCAACCCTCCTCTCAATGTCTATGCAGAGCCTGATGTGGTATCTGGCGGACAGATGATGGGACTCACATTTCGCCCCCCAATGGAAGAAGGCTACACCATCCCCTTCGCCCACAACCTCTACGACACTCCTGGACAGCTTCCTGAATACGCAGATCCTATTCCACCCGAACCAGAATATGCAACACCCTTTAGCGAAATGCCAACAGACTCAACAATAAACAACAGAGAGAATCTACCAATGTGTAGATCCACACAAATCTCAAGATCAGACAAACAACAGTACGACTGCCCTGCACACAGAGTGATCTCAAACGGGTACTGTACTCCAGTCACACATGGTACAGGCCAACAGAAACCTGCTGTGATTTACTTTGAGCCTCAGACAGTAGAACCACTATTGCATACCTACCATGAGCCACTTTGAGCCAACATGGCGTCACCTGCTGGAGCCGGTTTGTGATGTTCTTCCACTGTGTGTAATGTAACCTTATAGGGATCATCAGCAGTGTTACAGgaaattattattcttttgttGGTAACTGTTATGTAGGATATGGGAGAAGCGCTTATACGAGCAAAAGtttgttgttgtgtattattttatttaaatataaaatgcgGGTGTGTTTTATATCTGGAACTAATCAGAATATTGTACAAGAGGATTTGATTTTTAACCAGTGAAGTATTCCAAAATGGAGttttaatagttaataaataTACTTGACATTTTTCATACCACATTCTGAAGTGTTATTACAAaagaagagtaaaaaaaaactttattctgttttattttaaattgtattacttgtttattttcttcagatTAAACACAATATTAAGAAagcaatatttggtggaataacctttaatttcaatcacaacaaatgcCTTttacttgttaagggtccaaaagtaataggacagaataataatcattaatcaaacttttactttttaatgcttggttgcaaatcctttgcagtcctTCACAGCCTAAAGTCTGGAACGCATAGGCCTCACCAGACGCTGGGTTTCATTTCTGGTGATGCtgaaaacaagcaggaactgaagacagttgctgtagatgCCTGGCagagcaagtgaaatgcatgctcaatcagattcaggtcaggtgattgacttgacCATTGCacaacattccacttctttcccttcaaaaactctttggttgtttttgcagtatgctttgggtcattctccatctgcactgtgaagcactGTCCAATGAGTTCTGAAACATTTGGCTCAATATGAGCGGAAAATATTGACTGAAACACTTCCTCCATCCTGCTGTCAGCAGTCATCTCATCAATAAATACATGAGAACCAATTCCGTTGACAGCCATACATTGCCCATgccatgtcactactaccaccacTGCTCAAGATCGTGAGGAGTTCCTTTCCTTCTCTATACTCTTCTCTTTcaatctttcattttcttttcagcttagtccctttattaatccgtggtcgccacagcagaatgaaccgccaacttattcagcacgttttacacagcggatgcccttccagctgcaacccatctctaggaaaccatacacactcacacactactgacaatttagcctacccaattcacctgtaccccatgtctttggactgtgggggaaaccggagcaaccagaggaaacccacgcgaatgcagggagaacatgcaaactacacacagaaatgccaactgacccagccgaggctcgaaccagcaaacttcttgctgtgagatgacagcactacctactgtgccaccccATTGCCCCTGAACGGTTTTGTTCAATCCATTTAGATTTGTAACCTTCATGCTCTCAACACAAACTttattgtgtagaacccagcatttttacagtgtacatacatacatacatacacatacatacatacatacatacacacagagaggaagtacatgaaataaattaatgaaagttttttttttaatattattttctcaGTACATAAATAatccaacaaaaaaataaataaataaacatatacagaGAAACCCGATTTCAATTTTCAATTTCTCTCAAGTCATTCTATAGCTGTGTATCTGTCATAGAAGATTCTATTTAAACTATTTGAGGATATGGGGGGGGGATTCCATCTTTACATTACAAATGAATTAGGATTGATTTTGAAATTAAGGATTGAACATTGATAACCATGTTCTCCAATGTTAAACATGCTGATATTTTTGGGCAGTGCCACAAACCACTTTAATTAGCTATAGTGTCAGGATTGTGGTGCATTTGTCTTAGAAATGTTGCAATTGGTGTTAAACTGTAAAGTTATTTGGTGCAATATTAATCATGGGAGGTATAGCAATAGCAAAATCATTACaattgattaaaaaagaaattggtGCAACTGAATTTTCACTGGTGTATAATCTTTAAACAACATGTTAAATATTTGATTAAGATTTGTTTTGGAGTTAAACAAGGAATGAACAGCTGaatgaaaccaaagcacccggaggaaactcacacacacatggggagaaaatgcaaactccacacagaaacgacaactggcTGAGCCGGGACTCCagcaagcgaccttcttgctttgaatcaacagtgctaaccactgagccaccgtgccacccacttTAAAAGCATATTACTTTTATTCATGTCAATGAATAGATTGACCAAACATGTGTCAATCAATGTCACACATACTACTTACTCATTGACTGCATGACCATCAGAAGAGATATCATCACTCATCTTAAAATGGTATAATTAAattagaatttagtttttttataaattaaaatttaaataaattataatttttagcaGTTTTGAAAGGGCAGCAAGGTTGCACACAGTACAGCAAAGACAATGTGGGGCTACACTTCAGTacaccaaagaaaaaaaacattaaggcaTGAGATGATTCTTACTTGaatcttttatattatattttttggaAATATAAAGTAGGCTGTAtattttttgcatatattttttatgtatttcgatgccatgttaaaaaaaaagttttgttttttttaatgtattacatTGTTCCTTGAACTTGCTAGAATGGCTTCTGACTATGATAAATGCTTTCTATTCTTGAATAAACTCGCCTGTCACAATTCCTACCAAATCAATAGAAGATTAAGCTAAACGTTGTTTTGTATCATTTG
>TCONS_00020041
ACGACATGAAGTAAAACTCATGAACGAGTCCGCGAAGGGAAGGAGGAATCCCGCAGGAAAACATGCATGCCAGTTATGGAGCTCTTTGGAATACTGTGGAATTTTTTCGGGTTTGGCTTATTCTCAGCATCGAAGCACTGGTCTTGGTATACGGCCAAAAGGGCGATGGGTGTGGACACACAGTCCTCGGTCCCAGCAGTGGCACACTGACCTCGCTGAACTTCCCAGGAACCTACCCCAACCACACCCAGTGTGAATGGACTTTAAAGGTAGCGAAGGGCCAGACGCTGCTCTTGACCTTTGGGGATTTTGACTTGGAGAGGAGCCAAGACTGCATATCTGGCTCTCTCACCATCACAGACAGCAGTGGAGCCACCAGAGTGGGTCCTTTGTGTGGGCAGTTGTCGACCACAAACAGGAACATATCTGTGAGTACCAATGAAATAACAGTGCATTTCATCTCAGGCACTCACCGATCAGGACGGGGCTTCGTCATGTCTTATTCAACCAATCAGCACTCAGAACTCATTTCATGCCTGCATCGAGGGACGCATTTCTCCTCCCAGCAGATCAGTGCGTTCTGTCCTGCAGGCTGCAGAGGGGTTGCAGGAGAAATCTGGGGCTGGCATGGACAGGGATACCGTGATACATCAGTGTTATGTAAAGCTGCGGTCCATGCAGGGGTGATTTCAGACAGTTTGGGCGGCATGATCAATGTGTCTCTGCAGAGGGGCATTACCTTGTACGAGTCGAACTTCGCTAACGGAGTACTATCAAAAACCGGATCCTTATCAGACAAACGAGTTGTCTTCTTTAAAGAGTGTAATAGGGAGCTGATGGTGATGGCCTATAACACCTCTTCAGTTTGGGACGAGGTCAACAGGCTGGGCCAGAAGGTATCCTGGTCTCCGGAGCTCGACGGCTCTCAGTGGGCTGCCAGCTCTGCAGATCAGCAACCTTGGATGGAAGTCGAGCTCTGGAACAGGAGTACGGTCACAGGCATCATAACAAAGGGTACGCCACATTACTACATTGAATCTTACACCATCATGTACAGCAAAGACCGCAAAACCTGGAAGGCCTACAAAGCAGCGTCAAGCAAAGACAAGAAGGTGTTTGAGGCCCACTCTGATGGTCACGTGATGGTCCTCAACAGTCTAATTCCTCCAGTCATTGCCCGATACCTCTTGCTAAAACCCCAGAAGTGGCACATCAGGGCGTCTGCACAGGTTCAAGTGCTGGGCTGCCCTTCTGCCGCCCTCAGACCCCGTTCCCAAGGAGACGAGCTGAACACTAGGAAGGCAGTTGTCACAGAGACTTTGTCCATAGACACACTGCCCACCGAGAGCCCTGTGATCAAAAGAAGCTCAGGCCCCAGTCAAGCTGTGATATTAGTAGCGGGCATGGTTTTAGGAGCCGCTCTTTGTGTTGGTTGTCTTTTAGCTGGGCTTATTTTGTGGAGAAGGTAACAGTATT

Function

symbol description
si:dkey-34d22.1 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-338 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000103181

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020040 False 5346 mRNA 0.42 15 35343493 35379565
TCONS_00020041 True 1476 mRNA 0.51 12 35344031 35369344

Neighbor

gene id symbol gene type direction distance location
XLOC_010087 CR385021.1 coding upstream 62705 35206855 ~ 35280788 (+)
XLOC_010086 NA coding upstream 427240 34913284 ~ 34916253 (+)
XLOC_010085 AL929184.1 coding upstream 618811 34724568 ~ 34724682 (+)
XLOC_010083 paqr7b coding upstream 810605 34522977 ~ 34532888 (+)
XLOC_010084 stmn1b coding upstream 816287 34523515 ~ 34527206 (+)
XLOC_010089 si:dkey-34d22.2 coding downstream 155 35379720 ~ 35383122 (+)
XLOC_010090 si:dkey-34d22.5 coding downstream 16032 35395597 ~ 35398512 (+)
XLOC_010091 rab42b coding downstream 21978 35401543 ~ 35405887 (+)
XLOC_010092 cited4b coding downstream 155606 35535171 ~ 35537491 (+)
XLOC_010093 NA coding downstream 176201 35555766 ~ 35556976 (+)
XLOC_010082 NA non-coding upstream 841290 34478997 ~ 34502203 (+)
XLOC_010081 NA non-coding upstream 1020486 34319889 ~ 34323007 (+)
XLOC_010096 AL773558.2 non-coding downstream 346453 35726018 ~ 35726132 (+)
XLOC_010097 NA non-coding downstream 398110 35777675 ~ 35780839 (+)
XLOC_010098 NA non-coding downstream 435824 35815389 ~ 35817061 (+)
XLOC_010101 NA non-coding downstream 653853 36033418 ~ 36038394 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_03072793_03080040 NA coding CI01000016 null 3072728 ~ 3080040 (-)