XLOC_001009


Basic Information

Item Value
gene id XLOC_001009
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8978905 ~ 8980671 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003337
TTAATAAGAcgacaatgggctatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTTAAGCGGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAAGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAGGTAAGTTCAGCTAGCCTGAAGGCTAACTTTAGCGTTAATACTCTTACGATCCGTCCATCTGCAGCTTTATCACgtaagtaaaaataatcatatgtGTATGTAATTCTGACTCAAAGTGTCAGGTAAAAACAGGGCAGGAATAAGATCTCAGTGAGAGCTCATTACTACCGATAGGTCTATGAAGAAATCGGAGTCTCCTCACCAGCTGAGAGTAGGACAGCATACATGTGAAGTTCTGTCCCATTCATACTTTTACTGTTCTAAAGTGACCACCACTGTTCAGTTCGGATAATTACAGAAACACAGACGCTGTCTTAGCTTGTaagcatgattattgagcaagatatattaggaataaaataatacaatgccgTTCCATCCACAACAGACAAATAGCACTGTGTCAATGCTGAGATTTATTGCTGAAACAGTGGAGATGACAGATGTAGTGTAACAGTGTAGATAGCATGCTTTCTATTTAGTcgataacattgtaattaaatgggagggtgacccaaaacaataaggtgtcattagttaatttcacatcaacaatttgtctattgcaatatttattattatttatgttaatgaacaaatgcttattcattgtgcttgttaactcacaatgtaatagctaatgttaacaagcatgactttggatatttattcattagtaaattagtttaacaatgctaactattaaatattaaatagttattttaaaagtgagcaaatacattaattaatgaaaccttattttaaagtgtgactaaagggagctacttttaaataatttaaattaattatttactgtgtagtttaatctgatgatattgctgcagatgcctttaaaaagaagatattttgaagaaagctgaaaacctgtaaccattgactaccatagtaggaaaaataactactatgaatatcagtggttgcaagtttccagctttcttcaaagtatttttgtttgtgttaaacatcagaaagaaactcaaacaggtttggaacaagtgaaggatgaggaaatagaattttcagttttgagtgaactgcctttaatgactcactttaaaaacctattaatattcttgtttctgttttctagGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATCCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgCTTTGCTTTTCCAGACAGTCCATTactctgaaatgtgtaatgtttgttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagaggggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAATTGattcaatgtcatttttttctgttcatctgaataaaatatttttttcaaaatgt
>TCONS_00001605
AGAcgacaatgggctatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTTAAGCGGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAAGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAGGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATCCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgCTTTGCTTTTCCAGACAGTCCATTactctgaaatgtgtaatgtttgttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagaggggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAATTGattcaatgtcatttttttctgttcatctgaataaaatatttttttcaaaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0007492 endoderm development biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0009888 tissue development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0007369 gastrulation biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-090312-62 No description available

Ensembl:

ensembl_id ENSDARG00000094206

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003337 False 1767 lncRNA 0.35 1 8978905 8980671
TCONS_00001605 True 647 mRNA 0.39 2 8978908 8980665

Neighbor

gene id symbol gene type direction distance location
XLOC_001008 NA coding downstream 942 8974500 ~ 8977963 (-)
XLOC_001007 socs1b coding downstream 12859 8962624 ~ 8966046 (-)
XLOC_001006 grin2ab coding downstream 50064 8763429 ~ 8928841 (-)
XLOC_001005 abcg2b coding downstream 286936 8673061 ~ 8691969 (-)
XLOC_001004 actb1 coding downstream 325520 8649099 ~ 8653385 (-)
XLOC_001010 NA coding upstream 101171 9081842 ~ 9082772 (-)
XLOC_001011 si:ch211-14k19.8 coding upstream 119776 9100447 ~ 9115034 (-)
XLOC_001012 ndufab1a coding upstream 137429 9118100 ~ 9123465 (-)
XLOC_001013 palb2 coding upstream 144352 9125023 ~ 9130136 (-)
XLOC_001014 palb2 coding upstream 151664 9132335 ~ 9134045 (-)
XLOC_001002 NA non-coding downstream 353639 8612575 ~ 8625266 (-)
XLOC_001001 NA non-coding downstream 391546 8579155 ~ 8587359 (-)
XLOC_000998 NA non-coding downstream 468839 8504977 ~ 8510066 (-)
XLOC_000996 NA non-coding downstream 773677 8202390 ~ 8205228 (-)
XLOC_001015 NA non-coding upstream 157967 9138638 ~ 9139160 (-)
XLOC_001016 BX004779.2 non-coding upstream 176639 9157310 ~ 9162637 (-)
XLOC_001018 BX004779.1 non-coding upstream 217188 9197859 ~ 9197966 (-)
XLOC_001023 AL954703.1 non-coding upstream 327600 9308271 ~ 9321931 (-)

Expression


Co-expression Network