G245967


Basic Information

Item Value
gene id G245967
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3600603 ~ 3603196 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU279197
AACTCATATTTTATTTTATGTATAGCAATACAATTTACATATTAAATAACACTATAATAGAATGCTTTGATATAGCTTTCAACAAAAAGAAAAACAAAAAAACAAGAAAAAAAAAATCCTTTGTGTGTTATTCCAGATTACAAAAAGAGGATATGATGGTGACACCCACCTGCTTTATATGAGAGAATTATTCTTTGACTTAGAAGAGCTATTCTATTGCACTTCTGGACAATGAAACAGATTTTATTTAGATTCAAAGAGGGAAAAAAACAAAGAAATACCACAATCACTGCCTTAGTTTATGATTGTTGTGAATGTTTTTGGAATGTGATGTCAGCCACCTTCTGAAGGATCTGGGGACATTTTGTGTTAACCATCAATATGAGAACTAAACACAAAACTAAAAACAAACAAAGTTGATTTATATGAAAATATAACGTTTGCGACTATATGCCAGGATACAAAGCTTTCAGAGAGCGATGGGTTATTGAAGCGACAAAAGATATGTACATGATAATGCAAATATGTTTGCAAATGCAACCCACAAATAATGCTAGGGCAAGAAAAGGAAAAAAAGGAGACACCATCAAAAACATTCTTTTTAAAACTTCTTTCCCAATAAAAATAAACACTTTCTCACACGTTTTGTGAATGGAGTGACAGTTTAGTCTTTGGTAAAAATTAATGAATCATGGGTCCCCTGTTTTTTAAGACTGATTCTAATGTTATGTTAGCAAGGCCTTTGCGCTGTATGGTATGAGAAAACCATTTATGATATTACAGTAACCATTTTTCCTAGCGTATCTGAGGATAATCGATATGAAATGACACTGTGAGAAGTCTGTTTAGTGAAGAAATGCGTAGTCTACAGGTTTCTAGTAAAACCAGTCAATACCAAACACAACACACACCTATATCACACACATACACACACCTGCCGAGGTGAAATGAGACTGTACAGAAGGCATCGAGAGACTTGTATACATTATTCTCAAAGTTATGGGACGGCTTATGACAGAGAGCTAGCTAAAAAAAAAAAAAAAAGAGGACAAAGTAGAGCAGTAAAAAATTACAAAATTAAGTGGGCAAATAACAGAATTACCTCCTACATTATGAGTCCATAGGTAATGCGATATCATTACCTGTTCGGTCGCACTCAAGTGACACAAGTAGCAGCTTGCAGCATAAAGCAATGGCGAAATCAAACCAGCAGGGGGTGCTAGAGAAGTCATGAGCTCTGCGGATCCTTCAACCGAGCGCAGTGACTGTGACAGTTAACATTTACAAAAGCACAAGTTATCATGATATACGATATATTCATATATATTAAAAGCAGAATATGAATCATACAAAAGTTCACAGTAGCTGTTTTAATACCACCTTTTCGAAAGTAAATATGGGTTTAACTAGAAGCATAATGAATAGATCTACTATTTGGGGTGCGCAAAATGATCAGAGCAAATAAACAAACCAAAACTAACAGTCCATATAGCTCATATGGTCTTTCGTCGGTGAATCTGGCGTTTTGTGGCGAGTCTTCGCAAGTTGGGCGTGGGATTAATCTCTTTTTCCAGCTTCTGAGGTGTGCGTGGAAATCGTTTTTCGTTTGTGGCGGTCGTTTCTAAAGCTTCGGAGAGCAGCTTTATTATGGAATGTCAAAACAACGGTGTGACAGTGAGAGTTCAAGCGAGCGAGACGGCCTGACTGTGGTCGAGATGGTGGAGTAGGCAGTAACACTGATAGTTTCATAGTGCAAACTAGACAGAACTGTGTTTCATTTTGTTTTGTTTGTCGTGAACTCAAAAAACGTCGGTGCAAATGTTCAGTAGGATAACATTAAGACATAAAATGGCGAAAAAATAAATATCAAAAACTTTTTATCAGTGTAAAAAAGTAATCAGGTTATTCTTTTAACCAAGAGTTCTGGCAAAAAAGGCCTCAGAAAAAGTCTGTCTTAGTCCTTGAAGTTTTACAAAGTTAGATTAAGTGCCTCTTCGCGCCTGTTCGGGGGCTTTAGACGAGGGACTCCATGCTTTCAGCCGGGTCCGATTCGTCAGACATGGCCATACTGCCGTTTCTGTCCAAGGACATGGGGCTTGATCCGTTCTCTTTCGTGCTTATCAGGCTGAGCATAGCTTTGTAAAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU279197 True 2147 lncRNA 0.37 2 3600603 3603196

Neighbor

gene id symbol gene type direction distance location
CI01000057_03428989_03429249 NA coding downstream 170229 3428672 ~ 3430374 (-)
CI01000057_03345268_03367172 NA coding downstream 232593 3344746 ~ 3368010 (-)
CI01000057_03192667_03213688 NA coding downstream 386734 3192502 ~ 3213869 (-)
CI01000057_03027103_03027612 NA coding downstream 572752 3027080 ~ 3027851 (-)
CI01000057_02844117_02844398 NA coding downstream 753865 2843791 ~ 2846738 (-)
CI01000057_03629306_03634635 NA coding upstream 25730 3628504 ~ 3634635 (-)
CI01000057_03847471_03851892 GAMT coding upstream 244109 3847305 ~ 3852121 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 coding upstream 284007 3887203 ~ 3892054 (-)
CI01000057_03903266_03927695 ANO8, ANO8B coding upstream 298953 3902149 ~ 3927695 (-)
CI01000057_03964894_03967760 PLVAP coding upstream 361259 3964455 ~ 3968737 (-)
G246248 NA non-coding downstream 4966 3595345 ~ 3595637 (-)
G245973 NA non-coding downstream 9006 3590792 ~ 3591597 (-)
G246136 NA non-coding downstream 203398 3361699 ~ 3397205 (-)
G246132 NA non-coding downstream 243897 3353432 ~ 3356706 (-)
G245966 NA non-coding downstream 278347 3013263 ~ 3322256 (-)
G246250 NA non-coding upstream 1254 3604450 ~ 3604680 (-)
G246251 NA non-coding upstream 2422 3605618 ~ 3605857 (-)
G246298 NA non-coding upstream 12986 3616182 ~ 3616793 (-)
G246316 NA non-coding upstream 32762 3635958 ~ 3636175 (-)
CI01000057_01904867_01921400 NA other downstream 1679182 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 1795450 1801528 ~ 1806454 (-)
G244358 NA other downstream 3029575 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 1325548 4927533 ~ 4931420 (-)
G246780 NA other upstream 1607914 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 2320344 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location