G246297


Basic Information

Item Value
gene id G246297
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3637327 ~ 3661133 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU279532
TAGTTCAAGAGGAGCATCTATGGTTAAAACGTATATAATTTTAAATTTTTTTTAGAAAATGACAGATCGTTTCTCTAGATAAGACCCTTATTCCTCGTCTGGTGTCGTTTAAAGCCCTTTGAAGCTGCACTGAAACTGTGATTTTGAACTTCAACCGTTTGGGTCCAATTGAAGTTCACTATAAGGAGAATAATCTTGGAATGTTTTCATCAAAACCCTTCATTTATTTTCGACTGAAGAAAGAAGGACATGGACGTCTTGGATGACATAGGGGACCAGACCCAGGTTTGGGGAAAGATGGTTCCCCAGTGCTGTCCTTCGGCTCATGCCGCAGCTGGTCATGAGTCCTGTTATGGTTGTTGCGGCGACCCTCTAAGATCCATTTATGCTGCATGGCTTCCTGTGGTGTCATGCGCATCTTGGGGTCCCACCTGGAAAGGACAGCTGATCAAGCTCATTTCTGCCGGTGAAGATGGGATGCCCAGTGTGGAGCTCTGCTAGGATACAGCCAAGGCTCCACATATCTATGGCAGTGCCATAGGGCTGACGTAGCAGCAACTCAGGTGCACGGTACCACCGAGTTCCTATGTAGCCGAAAACTACAGTGAACATAGAGATAAAGATGAGAGTCATGAAAATGCAAGAAAAAAGAACCACCTAAAGCTTAACTCACCTTGCTCATCTTCATAGCAGCCGCATCCGAAATCAGCCACCTTGATGTCAGAGTGCTCTTCGTCGATCGCCAGGATGTTTTCCTATACAGAGCAATAGCATTATAGAGCAAATTGTTTCACTGCAGATCTTCCAACAGTGCATCAGACCAAAAGCAAACAAATCTGAATACTTATGAGGATGTAAAATTAAAAGGATGTCGAGTGTTAGTCAACTTACAGGCTTGAGGTCAGCATGTATGATCTTCTCATCGTGAAGCACCTGCAGGCACTTCAGCAACGAGCAGGCATAACGACGGACCAGATTCTTGGAAAGGCCCTGGCGGTGTCGCTTTTTAAGAACCTCATTCAGGTTTGATCTATGCAGAGATAAAAACACACCATTTTTTTAAGAAGCTGATTAAGATCTGACTTTCTGCTACATGTGCCAACATTTTAAAAAATCGATTGTCCTAGAAACTAGAAACTGCTGAAATCTATATTCTCATTCACACTCACCCCAGAAGCTCGAAGGCGATGCAGAGGTGTTTGCGAAAGATGAAGTGCTCTTTCATTTGGACGGTCTTGGTGCTGGAGTCTTTGTCTTTCTTGAGCAGAGTCTCCAAAATCTTGACCTCTGTCATGGAAGTTTGATCATCTTTCCTGTTACACAACAGAGACATACTGGGTTAAACCTGAAGAGTTCCAGCCAAACAGCAGCAACAGTTTTGTGTTTTCAGTTAAGTCTATTAAAAATGAAACCATATTTAGTAAACCAAATACAAATAATTAAGAATTCCATTTAAATTATGGAATGTAATAGACTTACATTCTGCGCAGTATTTTAATTGCAACCATCTCATTGGTCTTGTGGTCCCGACATTTGAACACCTGACCAAATGCGCCTTGACCCATCACTTCAAGCACCTCATATCGATAGGCGATGTGGTCATGAGCAACCTGTGAACAACACAAAAGAAACATTTAATATCCAAAACCAGAAGCTCACAGCTGCTGGTGCATCTCAGTTATCGATTGTATGTATCGAAAAAGTAATCAGTGGACTTCAGTATTAATATATCTGTAATATTGTTGTGTGATTTTAAGTATGATTGTAAAACAATTTCAAATCAAATCAATAGCTGCGTCTCATTTCAAAGGCTGCGTCCTCCGGAGGTCGCATTTGAAGACTGCATATGTCATCAAGCCCTTCTCATTTAAGAAGAGTAACCATTAGATTGCAAAGAAACAAAAAAATTACAGTATTTTACACCTCACAATGAATAACAGTTAATTTTATTACAGTTACTTTTCTTAAATAAGACATCCTTGATGACGTATGTAACCTCTGAAATGAGACGCAGCTAATATATTAAATTCTTTGTTTGGTGAGAAGTCGAGTCATCTTGTTTGAACTTGTTCATCTTAGCTAAAAGACGCTGACTAGGAATTGTTTTTCTTTGTGGAAGCTTTGAGATTATTACAAGTGTTCTCAAATATTTAAATATTTGTGTCCAAATATTTATTTATGTGCCCAGGAGCTGTGTAATGATTGGGATAATGTACATCCACACAGTTAACTTTTTTATAATCACTAACATCTCGCTGGCTGCACATTATCCCATACCTAATATATTAAACATGTAACATTAATAAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU279532 True 2310 lncRNA 0.40 3 3637327 3661133

Neighbor

gene id symbol gene type direction distance location
CI01000057_03629306_03634635 NA coding downstream 2692 3628504 ~ 3634635 (-)
CI01000057_03428989_03429249 NA coding downstream 206953 3428672 ~ 3430374 (-)
CI01000057_03345268_03367172 NA coding downstream 269317 3344746 ~ 3368010 (-)
CI01000057_03192667_03213688 NA coding downstream 423458 3192502 ~ 3213869 (-)
CI01000057_03027103_03027612 NA coding downstream 609476 3027080 ~ 3027851 (-)
CI01000057_03847471_03851892 GAMT coding upstream 186172 3847305 ~ 3852121 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 coding upstream 226070 3887203 ~ 3892054 (-)
CI01000057_03903266_03927695 ANO8, ANO8B coding upstream 241016 3902149 ~ 3927695 (-)
CI01000057_03964894_03967760 PLVAP coding upstream 303322 3964455 ~ 3968737 (-)
CI01000057_03995084_03999126 NA coding upstream 332757 3993890 ~ 3999163 (-)
G246316 NA non-coding downstream 1152 3635958 ~ 3636175 (-)
G246298 NA non-coding downstream 20534 3616182 ~ 3616793 (-)
G246251 NA non-coding downstream 31470 3605618 ~ 3605857 (-)
G246250 NA non-coding downstream 32647 3604450 ~ 3604680 (-)
G246334 NA non-coding upstream 18551 3679684 ~ 3679883 (-)
G246338 NA non-coding upstream 21138 3682271 ~ 3682835 (-)
G246337 NA non-coding upstream 38581 3699714 ~ 3701384 (-)
G246341 NA non-coding upstream 56949 3718082 ~ 3721824 (-)
G246342 NA non-coding upstream 58768 3719901 ~ 3724724 (-)
CI01000057_01904867_01921400 NA other downstream 1715906 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 1832174 1801528 ~ 1806454 (-)
G244358 NA other downstream 3066299 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 1267611 4927533 ~ 4931420 (-)
G246780 NA other upstream 1549977 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 2262407 5923540 ~ 5927295 (-)

Expression


Co-expression Network