G246281


Basic Information

Item Value
gene id G246281
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4207963 ~ 4208933 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU279516
AAAGAATAACAAAATAATTTATTTGAATTTTTTTTTCAGCATAAATAATTCCATTTAACAAGTAACCATGAGTCTTTTAGGCACTGTTTTACTTTATATGTAGAGAAAAATGTTAGCAAACACACTTCTGTACAGGGCACTAGCAAGACAAATATGACATGCCCCAATATGTAAAATTACCATGCTGCAGTTCAGTACCACATGTAACTCTTAAAACGAACACGAAAATATTGTGTAACCATCACATCTTAACAGGACAAATGACACGCTGTACATGAATAATGCCCCATCATCAGTACACTCATTCACTACAGAATGGCTCCCCTCCATCTGGCTTTCCACACAGCTTGACTCTGAATAAATATGGCAAAACATAACAGACTTGCATAGACTTCATTTTGCTAGGCCGAATTTGGAGAAAGGTCTATATGCATTGACATCACATTATCATCTGCAGAACTGAAATAATAGCAAATATAAGGACAGTTGCAAATGGTTATATAAGATATCCAACATATGAAAGCTTTTACACTCTTTTTCACTTTTCTCAACCTGTAATTGTGTAAGCAACAGCTTTAGCTTGGTTGGAATTGCTCCGTTTATCTGGTGGGAAGTGCTAGCTGTTTTATTAAGAGAGGCTCTCAGAGAACAACTTCACTGCATAGATCACTTAATTATATACAGTACACCATAAATTACAGTGTATGTTTGGTGTACACCATATGGCGGTCAGCAGCAGCTTTGCTCAACACAATGGTGGTAGGGTCTCTCAAAAACTGATTACTCCCATGGTTCAGTCCTGTTGCTTATGAGTTTCCACTGCATATCTTTGTTTAAATATGAAATAAGCATCACTCACTACACTGGAGGAAAACATTTTCACAGTTTAGTTAGCCCTTTACATTAGCACTAGTTAATGCAGCAGCTAACGTGAAATAAACTTTTACAGCATTGTTATTGTTCATTTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU279516 True 971 lncRNA 0.36 1 4207963 4208933

Neighbor

gene id symbol gene type direction distance location
CI01000057_04195849_04198909 NDUFA11 coding downstream 9054 4195795 ~ 4198909 (-)
CI01000057_04145896_04146600 NRTN coding downstream 61173 4145264 ~ 4146790 (-)
CI01000057_04055321_04058726 POLE4 coding downstream 148894 4055291 ~ 4059069 (-)
CI01000057_04042903_04046286 CCL44 coding downstream 161643 4042770 ~ 4046320 (-)
CI01000057_03995084_03999126 NA coding downstream 208800 3993890 ~ 3999163 (-)
CI01000057_04210090_04214161 NA coding upstream 983 4209916 ~ 4214161 (-)
CI01000057_04455612_04467173 DDX49, DDX49.S coding upstream 246101 4455034 ~ 4467217 (-)
CI01000057_04467496_04467864 NA coding upstream 258540 4467473 ~ 4468001 (-)
CI01000057_04512368_04525620 COMP coding upstream 302944 4511877 ~ 4525620 (-)
CI01000057_04543887_04545600 NA coding upstream 333938 4542871 ~ 4546001 (-)
G246279 NA non-coding downstream 12404 4195024 ~ 4195559 (-)
G246429 NA non-coding downstream 67834 4061623 ~ 4140129 (-)
G246407 NA non-coding downstream 216087 3991561 ~ 3991876 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 non-coding downstream 317702 3887203 ~ 3892054 (-)
G246278 NA non-coding downstream 391620 3815644 ~ 3816343 (-)
G246474 NA non-coding upstream 424 4209357 ~ 4209730 (-)
G246488 NA non-coding upstream 38591 4247524 ~ 4247797 (-)
G246497 NA non-coding upstream 52941 4261874 ~ 4262549 (-)
G246292 NA non-coding upstream 68466 4277399 ~ 4278950 (-)
G246289 NA non-coding upstream 71645 4280578 ~ 4283109 (-)
CI01000057_01904867_01921400 NA other downstream 2286542 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2402810 1801528 ~ 1806454 (-)
G244358 NA other downstream 3636935 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 719811 4927533 ~ 4931420 (-)
G246780 NA other upstream 1002177 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1714607 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003203 CU062501.1 non-coding NC_007122.7 CM002895.2 6443457 ~ 6444163 (+)