Gene
RNA
| Item | Value |
|---|---|
| gene id | G246597 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 4532796 ~ 4534368 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU279869 | True | 1573 | lncRNA | 0.42 | 1 | 4532796 | 4534368 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_04512368_04525620 | COMP | coding | downstream | 7176 | 4511877 ~ 4525620 (-) |
| CI01000057_04467496_04467864 | NA | coding | downstream | 64795 | 4467473 ~ 4468001 (-) |
| CI01000057_04455612_04467173 | DDX49, DDX49.S | coding | downstream | 65579 | 4455034 ~ 4467217 (-) |
| CI01000057_04210090_04214161 | NA | coding | downstream | 318635 | 4209916 ~ 4214161 (-) |
| CI01000057_04195849_04198909 | NDUFA11 | coding | downstream | 333887 | 4195795 ~ 4198909 (-) |
| CI01000057_04543887_04545600 | NA | coding | upstream | 8503 | 4542871 ~ 4546001 (-) |
| CI01000057_04560576_04573644 | NA | coding | upstream | 25272 | 4559640 ~ 4573644 (-) |
| CI01000057_04583096_04590861 | ISY1 | coding | upstream | 48543 | 4582911 ~ 4590861 (-) |
| CI01000057_04597494_04597814 | NA | coding | upstream | 63047 | 4597415 ~ 4597814 (-) |
| CI01000057_04635274_04644405 | NA | coding | upstream | 100849 | 4635217 ~ 4644405 (-) |
| G246611 | NA | non-coding | downstream | 35127 | 4487312 ~ 4497669 (-) |
| G246617 | NA | non-coding | downstream | 36338 | 4495587 ~ 4496458 (-) |
| G246609 | NA | non-coding | downstream | 47614 | 4484909 ~ 4485182 (-) |
| G246588 | NA | non-coding | downstream | 72532 | 4450002 ~ 4460264 (-) |
| G246595 | NA | non-coding | downstream | 88982 | 4434813 ~ 4443814 (-) |
| G246603 | NA | non-coding | upstream | 22358 | 4556726 ~ 4557010 (-) |
| G246587 | NA | non-coding | upstream | 22743 | 4557111 ~ 4559437 (-) |
| G246632 | NA | non-coding | upstream | 63584 | 4597952 ~ 4598294 (-) |
| G246600 | NA | non-coding | upstream | 120609 | 4654977 ~ 4655439 (-) |
| G246658 | NA | non-coding | upstream | 179723 | 4714091 ~ 4714359 (-) |
| CI01000057_03887278_03892054 | ABHD8B, ABHD8 | other | downstream | 635105 | 3887203 ~ 3892054 (-) |
| CI01000057_01904867_01921400 | NA | other | downstream | 2611375 | 1904533 ~ 1921905 (-) |
| CI01000057_01801708_01806454 | LHFPL5, LHFPL5A | other | downstream | 2727643 | 1801528 ~ 1806454 (-) |
| G244358 | NA | other | downstream | 3961768 | 570530 ~ 571028 (-) |
| CI01000057_04927533_04931127 | CDK4 | other | upstream | 394376 | 4927533 ~ 4931420 (-) |
| G246780 | NA | other | upstream | 676742 | 5086312 ~ 5283617 (-) |
| CI01000057_05925181_05926068 | NA | other | upstream | 1389172 | 5923540 ~ 5927295 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| rainbow trout (Oncorhynchus mykiss) | trnae-uuc-61 | NA | coding | NC_050571.1 | CM025858.1 | 41304115 ~ 41304186 (+) |
| eurasian perch (Perca fluviatilis) | trnae-uuc_66 | NA | coding | NC_053135.1 | CM020932.1 | 12985817 ~ 12985888 (-) |
| striped catfish (Pangasianodon hypophthalmus) | trnae-uuc_18 | NA | coding | NC_047613.1 | CM018559.1 | 21210182 ~ 21210253 (-) |
| tiger barb (Puntius tetrazona) | trnac-gca_94 | NA | coding | NC_056709.1 | CM032078.1 | 1152861 ~ 1152931 (-) |
| mexican tetra (Astyanax mexicanus) | trnae-uuc_18 | NA | misc | NC_035911.1 | CM008314.1 | 24810929 ~ 24811000 (+) |
| mexican tetra (Astyanax mexicanus) | trnae-uuc_29 | NA | misc | NW_019172086.1 | APWO02001684.1 | 9563 ~ 9634 (+) |
