XLOC_010101


Basic Information

Item Value
gene id XLOC_010101
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36033418 ~ 36038394 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021985
CCCAGTTATGACCCAGTACCACAAAGTCGGTTTAGAAATTGAGATTTAAGTATTAAAAGCTGAAACAAGATATCTTTGCATTGACgtatagtttatttaaaaaaatgtgctagtaaataaaatagtaaCTAATGAACAGCAATTTAATGTTAACACAGCTTGCCATAATCATTGCTTTGACTAATAAGGTTGGGTCCACACTGAAGCTTATTCTGGCAAACAAAATTGGCAGATAACATACAATACAGGAGAATAATGACCAGAGCTCCAACATCTACACAAACATTCAGATGATTAATGAGCACTTACGATGCCGAAAGTCTTCTGTAAAAGAGGAAATGTAGATACCtgaaggaatagttcatccaaaaatgtaattatccAGAAatatactcaccctcaagccattaTTGGTGTGTGTGCCTTTTTCCATTAGGACAAACACAATCTAAGTTACATTAAATAAAGCACTGGCTTTATTCCAACTTTGATGGAGCAGTGAAGGCTGTTTTTAAAGCTCTAAAGAGtgcgcccatccatccatcataacaAGTAACATATAACTCAGATTAgtaataatatgtattttaaagtgatattttttCTAAGGAATATATAGCATACAGCCTTCGAAATTGatataaaaataagcatttttaaacCAGACACTGCAAAAACAAGTGGATTGCAGGATATATATAAAGGTTAGCTGGGATGATATCACAAAGAAAGCTTTGGAATTGCTCTCAACATCACATAACCCAAACAAATCAATGTACTTTATAGTATAAATTGAGAAATTATATTAGTCTGGGTATCACTGCGTGTCATTACACTTGTCTGCCACAAGAGGGCAGAACGCCACCTAAAATGCAGTGGTGAATAcaggtgtcctgacattttatcctacccgtcagattatgctaccaagtACAACTCTGTATATGAATGGTTCTGAAGTTGGGGTTAGGGTGATGATGAtcttacagcttcatatcacaatACTCAACATTCAAATTTGCattggtagcaaaatctgatgggtagcatattgcgtcatcaaaatgtgctacctactttttgaatgggaggtaggacagacaatctgacaaggtaggacaaatcgacagaacaccGGTTCTCAGACCGTCACCAAATGCACTGACAGCTTCCAAATAACCATTGAGAATCAATACAAAAGATTATTTCAATAGGAACAAAGTTTTAATCCTGAAATGCGTTGAACAAAATGACTGCACAGTGTTTTTGCAGACACACAACTATATTAATTCacttattaattttccttcggcttagtctgtttattttatcaggggtcaccacagcagaatgaatcactaacttatccagcaggttttacgcagctgatgcccttccagccacaacccagcactgggaaacactcatacactcacattcactacagccagtttagcttatttaattcaccaatactgcatgtctttggactgtggggaaactgaagcacctggaggaaacccacacaaacaaacacagggagaaaatgcaaattccagcagggactcaaaccagcaaccttcttgctgtgaggagacattGCTAACGACTGAGCCACCATGATCCCGCACAACAGTATAGATATACACAAaaccataaacaaacaaattccaTATCAAAGTTTATTGCTGACATGCATGTAGAGATTTGATGAAGTACAAAAATATGTCTTTTATACAAATTTGTTTTTCATCTCTGTACAAttacccagttttttttttttcctttgacaCCATTCTAACAGAGCAGCTTACGACATCAAACTTTCAGGCTTTTGACTAGTTTCATTTTATACCAGATTTTAATTTTCCAGTTTTAATAAAAGACGCAGAAAAAAAGGTAACAATTCAAAAGACGAACCTCCCAATTTATGAAACACCTGCACAAAGtggcttaaaaaaagaaaagaaaatcaaacctAATGTTTAGGATTTTCCCTTGCAGTGTCTTTTTCGGAGTACTCAGCGTTTGCAAACTCCCACATTCACTCCAATTTCTGCTGCATCTCGTGGCGCGTCTTGCTTATCAGAATCATGCACTAATTGTTAATTGTAAAATGTATACAGAGCTCAACAACATACACTTCTCATGCTGCAGACAGAATTTGGACATCACGAAACTGCCTATGCAAGGGTGGAGGGGGGGCCGTTTGCAGTCACTTACGAAAAGGGGGCtatattaaaactgaaaaatacTAATTCTTTAATAGGTTTTGGATACAGACTAAACAATCACATCAACAGCAGTCATATTGCAACCTTACGGATTTCGCTATGATATAATGGCTTTCGTGATATCTCTACGTGGACCTAGGATATTGGATCTCCTTTTGGAAACTACGCAAAAGACTTTGCTCTTCTCCGTCATCAAGTCACACATATTATCCACTACAATACTGCTTTACGATCAAATATATTCACATTGAGGTGGGAAAAACTAATGCTTTCGATGGTGGCTTGCGCTGAAACGTTGGTGTGAATCTTCAAAGTACTAACACCCTGTACTGGGTTTTGCACTACTGATTTCGCCACTGCGATGTCTTTCACACTGGCCAGAGTGCGATATCATCCTTACCTCGCAAGATAAACTCTACATGTTATGCTAACGTGCACGATAATTTAGTTGACTTAAAAATAGAGCTATGCAAAGTCAGTCTCCTAATTAGTGTAGCTTAATATACCAATAGGATTGTTGCAATAATTattcaagaataaaaaaaaaagaagaaagtcgATAAAAGAAAAACCTTCACTGAAGATAGAAGGAAAAAACGTGAGACATCACAGCAATGCTTCTGAGTGATACATGATCTCTACATTTACCATGGCAGACGAATTATAAACAGCAAATAAATTACAAAGGAAAACAGAAAGGCGAGAAGTACAGAGGAAATTAAAGTACGGGTTAAAAAGGACAAGCCAAGCTGCTAGCCATGAGTTGAGAGACCTACAGTACTGAATGACCTTTTCATCTAAACGACATGAGTGGAGCCGGACATAAAGGCATTGCAAACTAAGCCACAGGTCAATGCAAGCCAACCGCCTAGTATACTAAGATATAATCTAGCATCAAAAGTACATATTCACTGCTCACGGTTGAATCTGTCGATAATCTAAGGCAAGATATCCCACAGTTATGCTTTATACACATGGGGTAGCTTAAAACAGGATTTGAGGGAAAAAAACCAAACAGAAAAGTCAAATGTTTCCTTGTAAGAAACGGATTGAGTgagactgatggcatttccttCCTGATGAACATTATTTAATGACCACAGATGGAGATGAGGGGTGGATGAGGAGATgggattaaaaacaaaaagacagtCCCCTGTCCAATGGGTTTCTTTGTGTATCACTGCTGCCGGAAACGTTCCCTAGCGGCCAATCCATGATCCCTGAGCTGCAGCTGAAATCTGTGTGGGGAACGAAAAGCACCGGAGACATGGCGGAAGATGCACTTTGATGGCTTGGCATGCAATCAGAGAGGGCGAGCGCTCTTGATGGAGGGACACCAAAGAAAAGGAGGTCTTAAGGGCTGTGCTTACAGGGCTTATCTTGGCTTAGACTTCCGCATGACTACCGGCTCAGCCGCCCTGCTTCCTGACAGTTTCATCCCATCACCAGCTGTCCAGTACCTTGTCTTTTTCCAAGCACAGCCCTGCGTGACGCAAGAAAATCCACACCAGTGCCACCCAGCTCAGCTCTTAAGAGTCCGCTGCGGTGGCGCATCAAGCGATGAAACGTACACTGGTCAAATGCACAGGAAATGGTGGTCTTTAGCGTTTGGTGCCTTCAGATtggatgaaagaaaaaaaaaaaagagaaggagGGAGGGAGGGTGGAAGGGATGGGATAACGTACCATATCGGCTGGTTTGGATGCCAAGTTTTGGTTCTACGCATCCAGACACAGATGCTAGCTGCCAACAGAAACCCATTCAAAGAGGAGTGTGAAACATGCGCTTCGGTAATATGAGGTTATTAGCTTTCTAACTTGTGATAGTTAACATCTTCAATGGAAAGAAAGAATAATCGTATTCAAAATGCTACTGTTTGAGTAGAAGAGGAGAGGGGGAGCTTATTTTCAAGGAAAAAACCAATCACTGGTTTTGACAAGATAGTTACACAACCACAATGCTAATGCTCTTGAGCCTGTGCTTGTCTCCCGCTCAACACGACGAGTCCTGCTTTCAGAACGGAGAGCGCTGCTAAAAACTGACCGAGAAAGGAGGAAATAGAGAGATAGAAAAAAAATGCGACAGGGTGCTGAGCTGTTCCTTGGCCAGTGTTtgccggacacacacacacactctctctctctctctctctctctctctcacatgcacaaacatacacaagtGTGCGCCCAGTTCCGTGGCTCGCTTCACTCCTGGTGACAGTACGGTGGTTCTACTTCCGGAGGAAGCGCTGGGCCAGTAATGCGGCGTCCAGAGGGCTGATGGGCTGAGCGTCGTGGCCGAGGCGCCTCACTGGAGGCACGTTACCAAAATGCCTCTTGCTGAGGAAGTTCTTGGTCTCGTGGATAGTGTTCTTCTCTTCTGCCAACAAGAGCTGTTGCCTCATGTAGTTCTCAAATTCATACTGAGACGACTCCTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021985 True 4680 lncRNA 0.41 2 36033418 36038394

Neighbor

gene id symbol gene type direction distance location
XLOC_010100 sh3d21 coding upstream 95261 35905031 ~ 35938157 (+)
XLOC_010099 thrap3a coding upstream 131711 35870456 ~ 35901707 (+)
XLOC_010098 NA coding upstream 216357 35815389 ~ 35817061 (+)
XLOC_010097 NA coding upstream 252579 35777675 ~ 35780839 (+)
XLOC_010095 map7d1a coding upstream 257344 35661331 ~ 35776074 (+)
XLOC_010102 sh3bp5b coding downstream 87916 36126310 ~ 36163508 (+)
XLOC_010103 NA coding downstream 173386 36211780 ~ 36218004 (+)
XLOC_010104 NA coding downstream 200077 36238471 ~ 36339909 (+)
XLOC_010105 NA coding downstream 243866 36282260 ~ 36357102 (+)
XLOC_010106 NA coding downstream 307589 36345983 ~ 36348575 (+)
XLOC_010096 AL773558.2 non-coding upstream 307286 35726018 ~ 35726132 (+)
XLOC_010093 NA non-coding upstream 476442 35555766 ~ 35556976 (+)
XLOC_010087 CR385021.1 non-coding upstream 752630 35206855 ~ 35280788 (+)
XLOC_010107 NA non-coding downstream 509633 36548027 ~ 36557880 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110489088 LOC106583156 misc NC_048566.1 CM023220.2 38003059 ~ 38029406 (-)
tiger barb (Puntius tetrazona) G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 unknown NC_056713.1 CM032082.1 21211810 ~ 21214493 (+)