G246662


Basic Information

Item Value
gene id G246662
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4724516 ~ 4725178 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU279938
CTCAGTTGTCCTCAGTGTGAAAAGATGGATCTCAAAATCATACAGTCACTGCTGGAAAGGGTTCAAATATGCAAAAAATCCTTGAAAACTGAAGAATCTGCAGGACCTGAAGGATTTTTCTGAAGAACAGAGCTCAGTTTAACTGCTCAGGACAAACAAGAGACTCATGAACAACCATCACACAACAAAAAAAACAGTCATAGATCATCCAGATAACCACACACAGTATTAAGAATCAATGGTTCACATACTTTTTCATGCAACAGTACAGATTTCATTGCATTTAATCAGATAAAAGCTGGTTTATTTGTCTTTAGAAGACCATTGAAGACATTTTATCGGGGATGCATTTGGACTCATTGGCTATCTAGCTGTTTTAAGTGCACATGTGCTGCAATATTTGTGGATTGGGGTTGGTATATACAGTATATAGAGGTGGTCCGAGCGAATGGGTCTTGTATCACTCATAAGGGCTTTATTTTGCAATGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU279938 True 490 lncRNA 0.38 2 4724516 4725178

Neighbor

gene id symbol gene type direction distance location
CI01000057_04718947_04721031 NA coding downstream 3440 4718918 ~ 4721076 (-)
CI01000057_04657451_04663499 NRAMP-BETA, SLC11A2, NRAMP-ALPHA coding downstream 61017 4657262 ~ 4663499 (-)
CI01000057_04647822_04649004 NPFFL coding downstream 75512 4647773 ~ 4649004 (-)
CI01000057_04635274_04644405 NA coding downstream 80111 4635217 ~ 4644405 (-)
CI01000057_04597494_04597814 NA coding downstream 126702 4597415 ~ 4597814 (-)
CI01000057_04728914_04731946 NA coding upstream 3694 4728872 ~ 4733723 (-)
CI01000057_04743808_04746558 NA coding upstream 18228 4743406 ~ 4748097 (-)
CI01000057_04787300_04788191 NA coding upstream 61534 4786712 ~ 4788191 (-)
CI01000057_04794580_04834143 COL2A1 coding upstream 68339 4793517 ~ 4834429 (-)
CI01000057_04861618_04865902 ITGA7 coding upstream 136440 4861618 ~ 4865902 (-)
G246658 NA non-coding downstream 10157 4714091 ~ 4714359 (-)
G246600 NA non-coding downstream 69077 4654977 ~ 4655439 (-)
G246632 NA non-coding downstream 126222 4597952 ~ 4598294 (-)
G246587 NA non-coding downstream 165079 4557111 ~ 4559437 (-)
G246603 NA non-coding downstream 167506 4556726 ~ 4557010 (-)
G246669 NA non-coding upstream 24637 4749815 ~ 4750141 (-)
G246676 NA non-coding upstream 55588 4780766 ~ 4781052 (-)
G246691 NA non-coding upstream 76494 4801672 ~ 4804379 (-)
G246703 NA non-coding upstream 137626 4862804 ~ 4863182 (-)
CI01000057_04916382_04926437 ARFGAP1 non-coding upstream 188010 4916287 ~ 4926437 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 826825 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2803095 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2919363 1801528 ~ 1806454 (-)
G244358 NA other downstream 4153488 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 203566 4927533 ~ 4931420 (-)
G246780 NA other upstream 485932 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1198362 5923540 ~ 5927295 (-)

Expression


Co-expression Network