CI01000058_00333202_00355871 (PANK4)


Basic Information

Item Value
gene id CI01000058_00333202_00355871
gene name PANK4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 333040 ~ 355875 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_00333202_00355871.mRNA
TTATATAAACTAAAATAGTTTAATATAATCTCAGACTTCATAAGAATCATGTAAACTTTTTATTATTTCTTATAAATCTCAGTTTTCATAGATAACTAGCATTGTCGTTAGCTTTTAATAGTCTGACTTTGGTGGTTAACTAGCTGTCAAAACAATGTTATAATGACCAAATACAACCAGAAACAACTGTTCAGACTTGCATGTGAAAGTTTGCAAAACATTCGCAGTAAGATGGCGCTGTCTGGAGGGGCGGACAGAGGATCTCACAGCATGGATAAGAGCATAACACTCCCTCCGGATGAAATCTTCCGCAATTTGGAGAACGCCAAGAGGTTCGCTATAGATATAGGTGGCTCTTTGACAAAACTGGCCTATTACTCCACTGTTCAGCACAAAGTTGCCAAAGTAAGGTCATTCGATCATTCAGCGAAGGAAAAAGATGGCGACCCTCTTTATGAGATATCTGTTCAGGAAGAGATTACTGCCCGTCTTCACTTTATCAAGTTTGAGAATGCTTACATTGAAACCTGCCTGGATTTCATTAAGGACCACTTGGTTAACACAGAAACCAAAGTCATCAAAGCTACTGGTGGAGGGGCGTACAAGTTCAAGGACTTGATAGAGAAAAAGTTAAAGCTAAAAGTGGACAAAGAGGATGAAATGACTTGTCTGATTAAGGGATGCAACTTTGTTCTGAAGAATATCCCACATGAGGCTTTTGTGTATGCCAAACACGCTGATTCTGAATTCCGGTTCCAGAATACACACCCGGACATCTTCCCATACCTACTTATAAATATTGGCTCTGGAGTCTCAATAGTAAAGGTTGAATCAGAGGACAAATTTGAGCGTATTGGTGGCAGTTCTATAGGTGGTGGCACTTTTTGGGGTCTTGGAGCATTACTCACAAAAACTAAGAGGTTTGATGAACTTTTGCAGTTAGCTTCCAAAGGACAACACACAAATGTGGATATGCTTGTTAAAGACATCTATGGAGGTGCTTACGGGTCCCTGGGTTTAACTGGTGACCTCATTGCAAGTAGCTTTGGGAAATCAGCCACCACAGACAAAGAGTTCTCCAAAGAAGACATGGCAAAGAGTCTACTGCATATGATAAGCAATGACATTGGACAGCTGGCCTGCCTCTACGCCAAACTGCATAACCTTACCAGAGTCTATTTCGGAGGATTCTTCATTCGAGGACATCCTGTCACCATGCACACCATCACCTATAGCATCAACTTCTTCACTAAGGGGGAGGTCCAGGCTTTATTTCTAAGACATGAAGGATATCTTGGTGCTATTGGGGCCTTTTTAAAGGGGGCAGAAGAAGACAACCCTAACCAGTACAGCTGGGGTGAGAACTATGCTGGCAGCTCTGGTCTCATGAGTGTATCACCAGACTTAAATCCTGTGCAGCGGGCTCGTAGCGGAACGTTTGACATGTTGGAGATGGACCGCCTGGAGAGGCAGCTAGTGAACCTCCCCCTGCTGCAGGACCCAACCTCTTATATCCCAGACACAGTGGACTTGACTGAGGATGCTTTGGCTCGGGAGTACTGGCTCTTCTGCTTTGAGGAGGCATTGGATGGGGTGGTGAAGCGAGCTGTGGCTAGCCAGAAAGACCAACCAGAGGCTGTGGAGAGGGCAGAAAAGTTTCGTCAGAAATACCGTCACAAACTCCAGACTCTCCGGCACCAGCCTTTTGCTTATGGATCCCTCACCGTCAGAAGTCTTTTAGACACAAGAGAACACTGTTTAAACGAGTTCAACTTTCCTGACCCCTACTCTAAGGTTTACATTGAATCATCCTTCACCTTGCCTGTGATCAAGCAGAAAGAGAATGACATGGCCCTGAAATACTATCTAAAGGTGGTGAAGTCAGTAGAGGAGCTGAGCTGGGAGCAAAGACAGTTCACTTTGGTCAAAGGCCTCCTGGCCGGCAACGTTTTCGACTGGGGAGCCAAAGCAGTGTCAGAATTTCTATATACTGAACATTTTATATTCCCAGAGAGGCCATGGCTTGTGGATGCCTACAACCAATGGATTGAGAGAATGAAGGGTCCTCCTCATAAATGTGCATTGTTTTTCGTAGATAATAGTGGAATAGACATTATTCTCGGGGTTTTCCCTTTCATTAGAGAACTCCTCATCCGAGGCACAGAGGTTGTGCTTGCCAGTAACTCAGGCCCTGCCCTAAATGATGTCACTAACAGTGAGCTGCAGATCCTAACTGAGAGAATAGCTGCCATGGACCCTGTCATTCAGGCTGCACTCAAAGAGGACAGACTTGCTTTGGTGCAGAATGGTTCTAGTTCTCCTTGTTTAGACCTGAGTCGCCTGGACAAAGTCCTGGCCACAGTCGTCAGGGAGCGGGGCACAGATCTGGTTATCATTGAAGGTATGGGTCGGGCCATCCACACAAACTACTACGCCATGCTCAGCTGCGAAAGTCTTAAACTAGCCGTCATAAAGAACTCCTGGCTGGCCGAGCGTCTTGGAGGCAAGATCTTCAGTGTAGTCTTCAAGTACGAGGTCCCTTCTAAATCTCGAGAGCATCATTAGGGAA

Function

symbol description
pank4 Predicted to enable pantothenate kinase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytosol and nucleus. Orthologous to human PANK4 (pantothenate kinase 4 (inactive)).

GO:

id name namespace
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_00333202_00355871.mRNA True 2569 mRNA 0.45 19 333040 355875

Neighbor

gene id symbol gene type direction distance location
CI01000058_00313907_00314170 NA coding upstream 18370 313757 ~ 314670 (+)
CI01000058_00241253_00245763 NA coding upstream 86933 241253 ~ 246107 (+)
CI01000058_00104333_00105839 NA coding upstream 226316 104333 ~ 106724 (+)
CI01000058_00043409_00059894 NA coding upstream 272618 43409 ~ 60422 (+)
CI01000058_00021632_00039608 NA coding upstream 293070 21480 ~ 39970 (+)
CI01000058_00382692_00395743 NA coding downstream 26817 382692 ~ 395774 (+)
CI01000058_00435196_00437830 AGTRAP coding downstream 79038 434913 ~ 455744 (+)
CI01000058_00466891_00481927 CTBS coding downstream 110758 466633 ~ 482017 (+)
CI01000058_00517452_00527181 TMEM38A coding downstream 161275 517150 ~ 528807 (+)
CI01000058_00529237_00544012 MEPD, THOP1 coding downstream 173310 529185 ~ 544027 (+)
G247309 NA non-coding upstream 513 332262 ~ 332527 (+)
G247300 NA non-coding upstream 16697 315979 ~ 316343 (+)
G247257 NA non-coding upstream 104506 227897 ~ 228534 (+)
G247192 NA non-coding upstream 189449 142755 ~ 143591 (+)
G247176 NA non-coding upstream 270914 61870 ~ 62126 (+)
G247314 NA non-coding downstream 65255 421130 ~ 421530 (+)
G247293 NA non-coding downstream 69883 425758 ~ 426095 (+)
G247316 NA non-coding downstream 71372 427247 ~ 427462 (+)
G247317 NA non-coding downstream 72569 428444 ~ 433463 (+)
CI01000058_00592498_00596709 NA other downstream 236456 592331 ~ 597171 (+)
CI01000058_01280337_01289153 DNASE2B other downstream 872734 1278592 ~ 1289874 (+)
G247940 NA other downstream 1097122 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 1439838 1794468 ~ 1800421 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002183 pank4,LOC106565907 coding CM030136.1 CM030136.1 6287217 ~ 6296247 (+)