CI01000058_00466891_00481927 (CTBS)


Basic Information

Item Value
gene id CI01000058_00466891_00481927
gene name CTBS
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 466633 ~ 482017 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_00466891_00481927.mRNA
CTATAAAACGATAAAAATCGTCTATTTATCACGTAACATTTCATGTCATGGGAATCGTGTTATCGAATATGGCCAATGAAAACAGTCCAATAGACAGTTTACCCCGCCCCCTTTGTGACTCGGTGTCTTATGTATTTCTCATCTATCGCTTTTATTTCTTTGGTGTCACATGTTAGTATTGTTTCTCTCTGTTTTGATGTGCAGACAGAAGTGATTTTCATTACAGTGTTTTAACATATAGTTTAGCATCAATAAACAATGTGGATTTCTGTGTCACTCTTCGTGCTGACTTTGTCCGCACAGGTGTGGTCCAACGTTTGTCCTTGTGCACGGGAAGAACTCTGTCAGCCCATTCGATCGCAGCCGGCGTTCGAGGTTTTTGTATTTGATGTTGGGAAAAAGGCTTGGAAGTTTTATGACTGGACTAAAGTGACAACAGTTGCAGCTTTTGGACAATATGATGCTGAACTCATGTGTTACGCTCACTCTAAAGGAGCTCGATTGGTCCTGAAAGGAGATGTGCCACTCCCAGATATTGTGGATCCAGTAAATAGGACAGCTTGGGTCCAGGCAAAGGTCCAGTTGGCAAAGAGTCAGTTCATGGATGGAATAAACATAGACGTTGAGCAGGCGGTGGAGACCGGTTCCCCTGAATACTATGCTTTGACAGCCCTTGTCAAGGAAACCACTGAAAGTTTCCACACAGAGATCCCAGGCTCTCAGGTATCATTTGATGTGGCTTGGTCGCCCAAATGCATCGATAAGCGTTGCTATGACTACCTTGCCATTGCCGATTCATGCGATCTCTTGTTTGTTATGTCCTATGATGAGCAAAGCCAGATCTGGGAGGATTGTATAGCCATGGCCAATGCCCCCTTCAATCAGACATTGACAGGTACCTCAGAGTCTTCTTTCCAAATGTGGTACTTCCCGGTTGCCTATGATCAATACATCAGCATGAACATAGAGCCAAAGAAACTTGTGATGGGTGTTCCATGGTATGGTTATGACTACAGCTGCCTAAATTTCTCAAAGGATGGAATATGTACAATTCCAAAAGTGCCATTCAGAGGGGCTCCATGTAGTGATGCATCCGGCAAACAAATTCCATACAGCATCATGATGAAACAGATCAACAGCTCCATATCAGGAAGACTGTGGGATGAGAACCAGCGAGCTCCATATTATAATTACAAGGACACAGAAGGCAGGGTCCATCAGGTGTGGTATGATGACCCAGAAAGCATTGCTCTGAAAGCTGTCTATGTGGCACAACATGGTCTGAAAGGAATCGGAATGTGGAATGGAAACCTCCTGGACTACAGCAGTGATCCAATCGCCCAGCAACAGACTATGGACATGTGGAACGCCCTTATACCCAAATGAACACAGGGAGTCTGCTGCTGTCTCATAGGATTCTCTGTTTCTTTTTGTCAATATTTGCATAAAAAATTTTATTGTTTTATTATAAACCGA

Function

symbol description
ctbs Predicted to enable chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in yolk syncytial layer. Orthologous to human CTBS (chitobiase).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K12310 CTBS; Di-N-acetylchitobiase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_00466891_00481927.mRNA True 1476 mRNA 0.44 8 466633 482017

Neighbor

gene id symbol gene type direction distance location
CI01000058_00435196_00437830 AGTRAP coding upstream 28223 434913 ~ 455744 (+)
CI01000058_00382692_00395743 NA coding upstream 70859 382692 ~ 395774 (+)
CI01000058_00333202_00355871 PANK4 coding upstream 110758 333040 ~ 355875 (+)
CI01000058_00313907_00314170 NA coding upstream 151963 313757 ~ 314670 (+)
CI01000058_00241253_00245763 NA coding upstream 220526 241253 ~ 246107 (+)
CI01000058_00517452_00527181 TMEM38A coding downstream 35133 517150 ~ 528807 (+)
CI01000058_00529237_00544012 MEPD, THOP1 coding downstream 47168 529185 ~ 544027 (+)
CI01000058_00548398_00567030 NWD1 coding downstream 65810 547827 ~ 567172 (+)
CI01000058_00592498_00596709 NA coding downstream 110447 592331 ~ 597171 (+)
CI01000058_00652594_00653181 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding downstream 170318 652335 ~ 654903 (+)
G247323 NA non-coding upstream 2652 463739 ~ 463981 (+)
G247317 NA non-coding upstream 33170 428444 ~ 433463 (+)
G247316 NA non-coding upstream 39171 427247 ~ 427462 (+)
G247293 NA non-coding upstream 40538 425758 ~ 426095 (+)
G247342 NA non-coding downstream 7149 489166 ~ 489403 (+)
G247337 NA non-coding downstream 24291 506308 ~ 507353 (+)
G247563 NA non-coding downstream 201209 683226 ~ 683442 (+)
G247578 NA non-coding downstream 234493 716510 ~ 716777 (+)
G247617 NA non-coding downstream 245422 727439 ~ 727828 (+)
CI01000058_01280337_01289153 DNASE2B other downstream 746592 1278592 ~ 1289874 (+)
G247940 NA other downstream 970980 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 1313696 1794468 ~ 1800421 (+)
G250039 NA other downstream 4212391 4694408 ~ 4697161 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003368 ctbs non-coding NC_007122.7 CM002895.2 16070438 ~ 16083608 (+)