CI01000058_00548398_00567030 (NWD1)


Basic Information

Item Value
gene id CI01000058_00548398_00567030
gene name NWD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 547827 ~ 567172 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_00548398_00567030.mRNA
CTATAAAATCACCTGCTCCTGTGGGGGCATTCTCAGTTTATTAAGTTAATGTGAATACTTGTCATTTACAATCATATTATAATTATTTGTAAAGAGGCAAAAATGATTCCAAGGATCTTTGACTCACAATCAGAAATGAAAAGCAACAGTAAATGCGTTTATACTCGTCAGGTTAATTAAACGTGTGGCAGCTGCTCCTGGTCTCCAGGGTCTGATCTCTGCTGCAGGCGGTGGGTCGTAAACACTGTGTCTCTCTCGGCCTTCCTGATCTCAGTGGATAAAATGACGGGTACAGAGGAGAACAAACAATTGTGCTGGAGTGCTTCGCAACAGAGCTGTTTTCTTTTCTTTATAGTGGAATACTGTGGAAAACGTATTTTTCATCTAGGGGCTCAATTAATATTCGGCTTTTAGATCTTTCACTTCTCAAACTAAGCAGTGATGCTCAGTAGTTCTGCAGCTCAGTATTCAATGCTGTAGATTTTTTGGGGGGTCACTAAGATTTGAGTGGGTTATGAAGACAGGAGCGCAGGCGACTATATTCTGGATTTATTAAAGTGTGTTGGTCAGGATGGCTGTGGTGGAGATGAGCGAAGCTCTTAGATTGGAGGCATTACAGGGACAGAGCACTGATGCTCTACAACCTGTTTCCAGAATGGTGCGGTTGTTCATCAGCTCCACACACTCAGACATGAAAAATGAGAGAAATGCATTCTGGGAGAAGGCCTATTCTGAGTTGCAGGCCCACTGCCAAAGTTTGGGTCTTGTCTTTGAGTTAGTGGATCTCAGATGCGGAGTGCGTGACCTTATCGCAGCGGATCATTTGACAACGGAACTGTGCATTAAAGAAATTGAAACCTGTCAGAGAATATCAGATGGACCGACTTTTATTGCTCTGCTCGGTAATCAGTACGGCCATCGCCCCATCCCACACCTTATACCAGAAACGGAGTTCAAGTCGCTGGTATCAAAACTTTCCAAAGATTCAGAGAGTTTAATGCTCCTTAACCAATGGTTCTCCAAAGACAGTAACTCAGTCCCACCCACATATATCCTCCAGCCAATCACAGCTCACTATCCTCATTACAATGACAGGAGTTCCGAGAGCGGACAGTTGCGTGATAATGATGTCATATCCTGGAATCTGACAGAGTCACGACTGCTGCAGGCTCTCCGCACTGCTGCCCAACAGGCTGAGAGAGATGGGGATATAAGTGTTGACCAAAAGCACAAGTTTTTCAAATCTGTGTTAGAGTATGAAATGGAGCAAGGATTTCTCAAGACTCAAAGGGATGCGTCAGCTGTGCTGTTTATTCGTGAACTGCCTCGACTTAGTAAAAGAGACTGCAAGAAAAACTTCGCAAAGTTTCTTCTGGACGTCACAGCTGATGGCTTGCTTGACACAGAAGCCCGGGAGCTCTTGGCCGACCTGAAGCAACGCATCTGCAACACAGGTCTTCTCCAACCTCTCTGCATGGAGCTCAGCAAAGGAGCTATGGACCCGAGCCGCAAAGAACACAAGGAATACCTGGGAAAACTGTGTGAGCAGGTAACATCTCAAATAAAGGAACTGATCAGTAGGAACGCTCTGCAAACTTCAGGAGGTTGTAGCACAGTAGATCCAAGATGGTCTTGGTTGAAACAGGAGCTCTTCCATCATGCCATGCTGAGCGAGGAGAAGTGTTCTGTGTTTAAAGGGAGGGACAGCATTCTGGGAAAGATCTGCATCACCATATGGGAGTCCACTAATGCTTGCCATGAACCTCTTCTGGTTCATGGACCTTCAGGGGTTGGTAAAACAGCTCTGCTTTGCAAACTGGCACAGGAAATGCGAGGCGTTGTTGATCATCGGGGAGTTGTGGTGCTGAGGCTGCTGGGAACATCTCCACTCAGTTCGGATGTTAACTCTGTTCTCAGAGGTCTATGTCTTCAAGTGTGTGGAGCTTCAGGGTTGAAGTTCCCCCACCCGCATATTGCCAACACGCATGAAGAGCTAGTCCGGTTTTTCCATTCCATGCTGGAAGACGTGTCAAAACAAGGAGACACGCTCCTGCTCATTCTAGACTCAGTGGACCAGCTGTTAGAGGCAGACAAGCCCCATAAACTAGACTGGATACCAAAAGCAATCCCACCTAATGTACATATTGTGCTCTCCACGTCTGATGACTGTGTTGAGAAATGTAAATCTTTGGTTTCAGCAGAACAAAACATCTTTAGAGTGGAACTTCTCACAGACGATCAAGGGAAAGATGTCATTGATGCCTACATGAGCGCAGCTGGACGCAAGCTGACTTCAGAACAGCTTGACACCATCTTACACAGCTTCCAGCAAAGCGGAAGCCCTTTGCATCTGAAACTCATACTAGACATTGCCAAGCAGTGGTCTTCCTGGACCTCCATGTCTAGTGTTAACCTGGGCATCTCTGCACAAGAAGTGATGACACAGTTTGTGCAATCACTTGAGGAAAATCATGGGAAGAAGCTAGTTAGTCATGCTTTGAGCTTCATATTGTTATCAAGATATGGACTATCAGAGGCAGAGTTACAGGATGTCTTGTCATTAGATAATGATGTTCTGGCCGAGATCTATAAGTACTGGCTTCCTCCAAGCCACACACTCCTGCGATTCCCACGCCTTCATTGGTCACGTCTCCGGCATGACCTGAGAGCTCATCTGGTGGAGAGATGGGAGGGGGGTGTTATTCTACTGGGTTTTGCTCACAGGCAGTTCAAAGAGCTGGTAAGGAAGAGATATTTGTCACGCAATGTGAAAGCTGACATGCACGCCATCCTCGCCGAGTATTTCTCAGGACAGTGGAGTCAAGGGCAGCTCAGGCCTATTCTTCTGCCCTCGCTAACCACACTGCTAAATGCTGACAGAAAGGTACCACCCCAGCCCTTGTGGTTCACTGGAGAAATTGCCAATTTACGGAAGCTTCATGAACTGCCCTATCACCTCGCTCATGCAGGCAAATGGGAGGAGCTACACAAATCAGTGCTTGGCAGTCTGGATTGGTTGTGTTGTAAAACTCTGCAGTGTGGCGTGAGCTGTGTTATTCAGGACCTGTCGCTTTGCACTGACCTCACCGACTGTCCTGAGATACAAATGCTGAAAGAGACATTTCTGCTGCTTAAGCCCTCATTAGATTTTAGCGATGGCAATGTGGATCCCTCACTTTTGGTCACGGAGATCTTTGCCAGGCTGCAGGGCCTTGCTGATCTCTACCCCTCTATGATTGGTCAGCTATGTTCTCAGTGCGTGGACTGGTTTAGTTCCTGTACTGACCCAGTGCTTGTGCCCAAATGCAGCTTCTTTCAGGCCCCTGGGGGCCCACTGAAGAGCACCCTCACGGGGTTCACTAAAGGGGTAAAGGCTGTCGTGCTATGCTCAAAGAGGGAGCTGCTGGTAGCAGGTTCAGAGGATGGGCTGATCATAGTCTGGAGTCTAAGCCATCTACAGACTCTTCATACTCTTTCTGGACACACAGCGGGGGTGCTGTCCCTGAAGATGGTGGATAAAACCAATAACTGTCTGTCTACTGCACTCGATGGCACACTGAGAAAATGGTGTCTGTTAAGTGGACAACAGCTTTTCTGCATCACTGATGCAGTGTCTGTCCAAACACACACCCCTGCACATGTCCATTTGATTGAAGAAAAGAAGATTATCATAACCAATCCAAGCAGCCTAGTTAAAGCTTGGCACTTGGACACTGCTGAGCCTCTGTATGAGGTGACAGCAGGGGTTTGTTCTGTTCTTGGTGTAGTGGGAGATGCCATAGCATGCATATGCAGTGAGGGGGTGCTCTGTTTTTATGACACATCCACTGGCATGCAGAATTCCCAGACCCCCCTACCCTGCTCTGCTGGACACCATAATATCACCTGCTCTCTGACACTCACCAAATACGCCAAGATACTCATTGCTTTTGGGGAAGGCCGTCTACATTCGGTATGGAGCCATGGAATTGAGTCTGTCGTTGATCTTCCTACTCCAGCTTTGTTCCTCAGAACATCTGAGGATGAAAAACTGCTGTTTGCAGGTGCCTTTACACATAAGGTTCTGAATCTTCACCATGATGCGTCTGTCCTATGTGCCGTCTCAAGCAGTGAAGGTAGCGAAATCATCACAAGTGCCCAGGATCGGATTATACGGGTGTGGAGTGTAACCACAGGAGCCCTGCTAGACTGGATCGGTGTGATGGATTCTGCTGTGTCCACTTTGGCTGTACATCAGCGCACTATTATATCTGCCTCTGTTATTGCCAACCAGCTTAAAGTATGGCAGCTGGACTACAACACCAAACACAGGAGCAAGAGTTTCATCCCAGCATACTGCCCGCTAGTGGTCCTGTCGAAAGACGGTGATACTGTATTCTATGTCAAAGAGGGAAATAAAACAGAAGTTTTCACCTGGAGCTGTTCGGAAGGTCTACAGACAGACAGTATGGACGTGTCCTCAGAAGTGTGCTGCATGGAATTAGCCCAGCAGAAACATCTACTCTTTTGTGGACTGCGGACTGGTACCATCCTTATTTACCCACTGGACTTTGCCCTAGAAACCCTGTGCCTGCCACCTCCAGAAAGCCTACCGACGGTGCGCAGCATGGCTATCAGCCCACGGGAGGATAGAATGGCCGTGGCATATGAGGATGCGGTCTGTCTGTTTGAGATTACAGCGAGGGACAGTTTCCCCTGTGTGGACGGCCCATTTGAGAGGTACTCCTTGTGCCTACTGCATTCCCCAATCTCCGCCATGGCTCTGTTGTCCGACTGCAGGCTGCTCTATGGGACCTTTGGTGGTGAAGTTGTAATCTATGACTTTAAGAGCGCCACAGCAGCTGAGCTGGATCACCACGGTGCAGCCATAACCTGCATCACCATGAGCAACTGGGACGCACAAGCTTTGATTGGCTCTCAAGACTGTGTCCAGAAGTTGTGGAATCTGAGTCCTGTCTTGTTGAATCACACCATGGAGTACAAGGGTTTCTATTTTGAAGGTGTCCTTTGTGCTGTCTTCTCGATAAATGATAAATATGTCTTCACTGGATCCCTGGACAAAACCATCAAAGTCTGGGATGTCTCTAGTGGTTGTTTGCTATACATCCAGTACGTCTACTCTCCAGTCATAAAGATGATGCCACACAAGGACGGGTTTGTAGCCATGTCCCAGCATGGATCTTTCATCAAGGAAGGCTTCCAGTGTCCAGACACTCTCAAACCTGGATACAACCCCCTCCGTAACTTCCAAGCACATTACCGAGTCACCTCTCGGGAGAAAAGCCTGAATGCTCCACACACCATGATCAACGAGCTGCCAGATTATAACCCTGCTCAGTTTAATTTCATTGGCATCGGTTTGATGAAAACCAAATCATCCAACACATGTGTTCTCCTGTAAGTACGTCCTACGTTCTCTTACGACCCAGCACCCCACAAATTTGTACAAAATTAGGCTTTACACTAGGATATCAGCTGTGTAATTGCATATATGTAATTACATAACAATAACTGTAATTACACAAAAAAATTATTTAAGAATA

Function

symbol description
nwd1 Orthologous to human NWD1 (NACHT and WD repeat domain containing 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_00548398_00567030.mRNA True 5543 mRNA 0.47 19 547827 567172

Neighbor

gene id symbol gene type direction distance location
CI01000058_00529237_00544012 MEPD, THOP1 coding upstream 3800 529185 ~ 544027 (+)
CI01000058_00517452_00527181 TMEM38A coding upstream 19020 517150 ~ 528807 (+)
CI01000058_00466891_00481927 CTBS coding upstream 65810 466633 ~ 482017 (+)
CI01000058_00435196_00437830 AGTRAP coding upstream 109417 434913 ~ 455744 (+)
CI01000058_00382692_00395743 NA coding upstream 152053 382692 ~ 395774 (+)
CI01000058_00592498_00596709 NA coding downstream 25292 592331 ~ 597171 (+)
CI01000058_00652594_00653181 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding downstream 85163 652335 ~ 654903 (+)
CI01000058_00728698_00738214 NA coding downstream 161348 728520 ~ 738938 (+)
CI01000058_00847992_00862210 NA coding downstream 280125 847297 ~ 862430 (+)
CI01000058_00870909_00930600 ADGRL2A, ADGRL2 coding downstream 303737 870909 ~ 930600 (+)
G247337 NA non-coding upstream 40474 506308 ~ 507353 (+)
G247342 NA non-coding upstream 58424 489166 ~ 489403 (+)
G247323 NA non-coding upstream 83846 463739 ~ 463981 (+)
G247317 NA non-coding upstream 114364 428444 ~ 433463 (+)
G247563 NA non-coding downstream 116054 683226 ~ 683442 (+)
G247578 NA non-coding downstream 149338 716510 ~ 716777 (+)
G247617 NA non-coding downstream 160267 727439 ~ 727828 (+)
G247641 NA non-coding downstream 173676 740848 ~ 754686 (+)
G247653 NA non-coding downstream 196423 763595 ~ 763815 (+)
CI01000058_01280337_01289153 DNASE2B other downstream 661437 1278592 ~ 1289874 (+)
G247940 NA other downstream 885825 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 1228541 1794468 ~ 1800421 (+)
G250039 NA other downstream 4127236 4694408 ~ 4697161 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location