CI01000058_01348684_01352173


Basic Information

Item Value
gene id CI01000058_01348684_01352173
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1348684 ~ 1352588 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_01348684_01352173.mRNA
CGGAGACAGAACATACACAAAGAGTCCCAGACACAGAGTCTGCCCAGCAAATGAGGCTGAGAGAGAGACAACGATTCTTTGAGGAGGTGTTTCAACATGATGTGGACGTCTACCTCTCCTCTGCACACCTGCAGATAGATTATAAGAGACCTCCCTTAGGAAGCATCTCATCAATGGAGGTGAACGTCGATATGCTAGAACAGATGGACCTGATGGACATCTCTGATCAGGAGACCTTGGATGTCTTCTTCAGCGCCAGCGGAGAGGAAGGAGGACTGACATCTCCTCTTCCAGCGCTTGGTCACACTGAAATAGAAGAGGATGGATTGCGGAGAAGTGACGTGTCCTTGAGAATTTCTGACACTTGTGAGATCAAAACACGTATGTTGTCCACTTCTTCCAACTCCACCTGTGACAGTCAGGCCTCCAATGAGGACGGATCAAACACTCCTGTCGTCCAATCAGATGATGAAGACGTGCAAGAAGATAGCCTGTTGCAAACAGGAGTGCGCACAGCCAACAATGCCGCAAAAGAGCCCCTGCCCTCTGCCCTCTCATTATAACCTGCCTTCCTATTTATTACTGACAGTTTGGAAAGTGTTTCAGGGTTGGGTTGAGTGGTTTTAGCCATAAATCAATCTACCAAAGACCTTCATGAAAGCTTGCGAAGTTCAACGCATTCAAGGCCCCTATTACGCCACACTGGGAGTGTCATGCTTCGACAGACCTGCATTTTTGTATTATCACTTGCATTTCATCAACATTTTACTATATCTTTCGCTGTTTTTGGGGAAAAAAATATCTGCAGGTATAGTGACACCACATACACACCACCAGTATTTTGCAATTTTCTTCACGAAGATTGAAGCTGATCTGTAGAGAGACCAAAGGCATCATTTTTTTTTAATTAAAACTGCTGAGGTGAGTTTCACAAAAATATTTCACCTCAAATATCAAAAGAAAACAAAATATTAAAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_01348684_01352173.mRNA True 978 mRNA 0.44 3 1348684 1352588

Neighbor

gene id symbol gene type direction distance location
CI01000058_01298298_01311989 BMP7A coding upstream 35638 1298076 ~ 1313046 (+)
CI01000058_01280337_01289153 DNASE2B coding upstream 58810 1278592 ~ 1289874 (+)
CI01000058_01266712_01271962 SAMD13 coding upstream 76632 1265753 ~ 1274437 (+)
CI01000058_01248234_01262911 PRKACBA, PRKACB coding upstream 85366 1248234 ~ 1263318 (+)
CI01000058_01239590_01240099 NA coding upstream 108384 1239502 ~ 1240300 (+)
CI01000058_01364846_01374544 NA coding downstream 12258 1364846 ~ 1374584 (+)
CI01000058_01384467_01388274 NA coding downstream 31616 1384204 ~ 1388927 (+)
CI01000058_01391493_01394283 NA coding downstream 38905 1391493 ~ 1394419 (+)
CI01000058_01431719_01434294 CHIA.2 coding downstream 78971 1431559 ~ 1434513 (+)
CI01000058_01496481_01498802 NA coding downstream 142282 1494870 ~ 1499810 (+)
G247960 NA non-coding upstream 17824 1303301 ~ 1330860 (+)
G247917 NA non-coding upstream 99780 1221593 ~ 1248904 (+)
G247995 NA non-coding upstream 116838 1230210 ~ 1231846 (+)
G248027 NA non-coding downstream 48400 1400988 ~ 1401268 (+)
G248031 NA non-coding downstream 50796 1403384 ~ 1403656 (+)
G248035 NA non-coding downstream 54068 1406656 ~ 1407006 (+)
G248036 NA non-coding downstream 56514 1409102 ~ 1409884 (+)
G247934 NA non-coding downstream 109695 1462283 ~ 1465887 (+)
CI01000058_00592498_00596709 NA other upstream 751513 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 892940 434913 ~ 455744 (+)
G247940 NA other downstream 100409 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 443125 1794468 ~ 1800421 (+)
G250039 NA other downstream 3341820 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3473788 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008172 NA coding CM030123.1 CM030123.1 44879010 ~ 44883212 (-)