CI01000058_01431719_01434294 (CHIA.2)


Basic Information

Item Value
gene id CI01000058_01431719_01434294
gene name CHIA.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1431559 ~ 1434513 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_01431719_01434294.mRNA
CTATAAAAACCTTAGGTTTTGATGTTCGTCCTCACATTTTCTTGAGGTACCCCAGGTATGTACCCATCAGGGAATATCTATATTAAGAATTCAGCTTAAAACATTATTTATTGTAATTAACAAAACTGAACTTTGTTTCTTATAGAAAATTGGCAATAAAATGGGGAAGCTTTCACTTATAGCAGCTTTCTCCATGGAAATGGGCTGCTACTTCACCAACTGGTCCCAGTACAGACCTGGAATTGGAAAGTATACACCTGCAAATGTCGACCCTTTCCTTTGTACACACCTTCTCTATGCATTCGCAATGATCAACCATGCCAACGAGCTTGTCACATATGAGTGGAACGATGAGACTCTCTACAAGTCCTTCAATGAACTCAAGAGCAGAAATCCCACTCTTAAGACTCTTTTGGCTGTTGGTGGATGGAACTTTGGTTCATCACAGTTCTCCATCATGGTGTCTGATGCAGCAAACCGTCAAACCTTCATTCAGTCTTCCATCAAATTCCTGAGAACTTACGGATTTGATGGTATGGACTTGGACTGGGAATACCCTGGATCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACACTTCTGTGCAAGGAACTTGTTGAGGCATATGAGGCTGAGGCCAAAGCTACTGGCAAACCTCAACTGATGCTGTCTGCTGCTGTAGCAGCTGGTAAAGACACAATTGATGCTGGATATGAGATTGCTGAAATTGCCAAGTACCTGGACTTCATCAATATTATGACTTATGACTTCCATGGAACTTGGGAAAGAGTCACAGGACATAACAGCCCCCTGTACCAAGGCTCAAAGGATGAAGGAGAACTGGTTTACTTCAATACCGATTACGCTATGCGCTACTGGAGGGACAACGGTACCCCTGTAGAGAAACTCAGAATGGGTTTCGCAACATATGGTCGCACATTCCGTCTGACATCTACAGATACTGAAGTTGGAGCCCCAGCTAGTGGACCGGCTTCAGCTGGAACCTACACTCGTGAGGCTGGATTCTGGTCTTACTATGAGATCTGTGGCTTCCTAGAGGGAACAACAATCCAGTGGATTGATGATCAGAAGGTGCCCTATGCCACAAAGAACGATGAGTGGGTTGGATTTGACACCAAGGAGAGCTTTGAAATTAAGGTCCGTTATCTGAAAGACAAGAAATTTGGTGGAGCCTTCGTGTGGGCGCTTGATCTGGATGACTTTGCTGGACAGTTCTGTAATCAGGGAAACCATCCTCTCATGGGCCATCTGCGCAATCTTCTGGATATCGACCCCAACAAATATTATAACTGTGCAGCAGGCACTACTTACATCGATAACTGTGGCCCAGGCACTGTGTTTGATGACAGCTGTAAGTGCTGTGCTTGGCCCAAACACTAAGTGATCACTATTGGAAAACCTTCTGAAAAACAACACACAAATGACACAAAACATCAACTATTTCACGTAAAGGAGCATTAGTGTAAACTGAACATATTTCTCGACTGTGTTACGTCTTCATTCCATCTGGGTGTAGTTTGTAAGTGAAAGTACCTCTTTTTAAATGACTCCTTTGTAAATCTGTTTCTTGTTCATTTTCTCCTTGCTTGGAAGAAATGA

Function

symbol description
chia.2 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1); CHIA (chitinase acidic); and OVGP1 (oviductal glycoprotein 1).

NR:

description
Zgc:55941

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_01431719_01434294.mRNA True 1624 mRNA 0.43 10 1431559 1434513

Neighbor

gene id symbol gene type direction distance location
CI01000058_01391493_01394283 NA coding upstream 37140 1391493 ~ 1394419 (+)
CI01000058_01384467_01388274 NA coding upstream 42632 1384204 ~ 1388927 (+)
CI01000058_01364846_01374544 NA coding upstream 56975 1364846 ~ 1374584 (+)
CI01000058_01348684_01352173 NA coding upstream 78971 1348684 ~ 1352588 (+)
CI01000058_01298298_01311989 BMP7A coding upstream 118513 1298076 ~ 1313046 (+)
CI01000058_01496481_01498802 NA coding downstream 60357 1494870 ~ 1499810 (+)
CI01000058_01580247_01591754 NA coding downstream 145150 1579663 ~ 1592253 (+)
CI01000058_01625351_01664692 PIK3C2B coding downstream 190838 1625351 ~ 1665794 (+)
CI01000058_01740599_01784355 PLEKHA6 coding downstream 306086 1740599 ~ 1784676 (+)
CI01000058_01794468_01800421 KISS1 coding downstream 359955 1794468 ~ 1800421 (+)
G248036 NA non-coding upstream 21675 1409102 ~ 1409884 (+)
G248035 NA non-coding upstream 24553 1406656 ~ 1407006 (+)
G248031 NA non-coding upstream 27903 1403384 ~ 1403656 (+)
G248027 NA non-coding upstream 30291 1400988 ~ 1401268 (+)
G247960 NA non-coding upstream 100699 1303301 ~ 1330860 (+)
G247934 NA non-coding downstream 27770 1462283 ~ 1465887 (+)
G248052 NA non-coding downstream 33124 1467637 ~ 1503560 (+)
G247993 NA non-coding downstream 57666 1492179 ~ 1550850 (+)
G248103 NA non-coding downstream 182063 1616576 ~ 1617014 (+)
G248104 NA non-coding downstream 182838 1617351 ~ 1617920 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 143289 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 834388 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 975815 434913 ~ 455744 (+)
G247940 NA other downstream 18484 1452997 ~ 1456447 (+)
G250039 NA other downstream 3259895 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3391863 4864571 ~ 4888216 (+)

Expression


Co-expression Network