CI01000058_01957358_02009847 (ATP2B4)


Basic Information

Item Value
gene id CI01000058_01957358_02009847
gene name ATP2B4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1957358 ~ 2009847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_01957358_02009847.mRNA
ATGGCTAACAACACTGCAGACCACCCACCGGGGAACTCGGTCACCGAGGTCGACCACGACGGGGACTTTGGCTGCACGATGATGCAGCTCCGTGAGCTGATGGAGCTCCGCAGTGGTGAGGCGGTCAATAAGATTGCAGAATGTTACGGTGATGTGCAAGGGATCTGCCGCAGGCTCAAGACCTCACCAATTGAAGGCCTCTCTGGTAACCCTGCTGATTTGGAAAAGCGCCACACATCATTTGGTAAAAACTTCATCCCCCCCAAGAAGCCCAAGACCTTTCTGCAGTTGGTATGGGAGGCCCTGCAGGATGTCACCCTCATTATCCTGGAGGTGGCAGCCATTATTTCTTTGGGCTTGTCCTTCTACCACCCACAAGGGGATGGCAACGACAACTGTGGCCAAGCAGCTGGGGGTGTTGAAGATGAGGGCGAGGCCCAGGCAGGATGGATTGAAGGTGCTGCCATCTTGTTTTCAGTTATAATCGTGGTGCTAGTGACGGCCTTCAATGACTGGAGCAAAGAGAAACAGTTCCGTGGGCTTCAGAGCCGCATAGAACAGGAGCAGAAGTTTACAGTCATCCGCAAGGGTCAGGTCATCCAGATCCCTGTGGCTGAGATCGTCGTGGGAGATATTGCACAAATCAAATACGGTGACCTTCTCCCAGCTGATGGTATCTTGATCCAGGGTAATGACCTGAAGATTGATGAAAGCTCTCTCACTGGGGAGTCCGATCATGTCCGCAAATCTCTGGAGAAGGACCCCATGCTCCTTTCCGGAACTCATGTGATGGAGGGATCTGGCCGAATGCTGGTCAGTGCCGTGGGCCTGAATTCTCAGACTGGAATCATTTTCACCCTCTTGGGTGCCGGCAGTGAGGATGAGGAAAAGAAGGTGAAGAAAGGTGAGAAGCTATTCCCTCCGCCCTCTCTCTCTCGTTTTAAACAGGTAAAAAACAAGGACCCCCCGAAAATCGCAACAAAGAAAGAAAAGTCAGTCCTGCAGAGCAAGCTGACCAGGCTAGCGGTTCAGATTGGAAAAGCAGGTCTCATCATGTCTGCAGTGACAGTCATCATCCTCATCCTGTACTTTGTAATTGATACGTTCGGCGTCCAGGGTCGTGAGTGGACGGCGGAGTGTACTCCCATCTACATACAATATTTTGTGAAGTTTTTCATTATTGGTGTGACTGTGCTTGTGGTGGCCGTGCCTGAAGGGCTGCCTCTAGCTGTCACTATCTCCCTGGCTTATTCCGTCAAGAAAATGATGAAAGACAACAACCTGGTTAGGCACCTGGATGCCTGTGAGACCATGGGTAATGCCACTGCCATCTGCTCTGACAAAACTGGAACGCTGACTATGAATCGCATGACAGTGGTGCAGGCTTTCATAGGTGACACACACTATAAAAGCGTTCCTGAACCAGAGGCCATTAATCCACAGACTTTGGAGATACTGGTGAACAGCATCTCCATAAACTCAGCATACACTACCAAGATCCTGCCCCCAGAGAAGGAGGGAGGTCTGCCAAGGCACGTGGGTAATAAGACAGAGTGTGCCCTTCTTGGTCTGGTGATGGACCTGAAGAGGGACTATCAGCCTATTAGAGATGAGGTTCCTGAGGAGAAGCTTTATAAGGTTTACACATTCAACTCCTCCCGGAAGAGCATGAGCACCGTACTAAAGAACGCCAATGGTCCTGGCTTCCGAATGTACAGCAAGGGTGCCTCTGAGATTGTCCTGCGCAAGTGTTCCCATATCCTTGATGCTTCAGGCCAGCAACGCATCTTCAAGGCCAAAGATCGGGATGAGATGGTGCAGAAAGTGATTGAGCCAATGGCCTGTGATGGGTTAAGGACCATTTGCGTAGCCATGAGGGACTTCACAACCGAGCCAGACTGGGAGAATGAGGCTGAAATTCTGAATGACCTGACCTGCATCTGTGTTGTGGGCATTGAAGACCCCGTCCGTCCTGAGGTTCCTGAGGCTATCTCTAAATGTCAGCGAGCAGGCATCACGGTCCGTATGGTCACCGGAGACAACATCAACACAGCCCGTGCCATCGCCACCAAATGTGGAATCCTGCAGCCTGGAGAGGACTTCCTGTGCATGGAGGGCAAAGACTTCAACCAGCAGATTCGCAATGACAAAGGAGAGGTTGAACAAGAGCGTCTTGACAAGGTCTGGCCCAAACTGCGTGTTCTTGCTCGTTCTTCCCCAACAGACAAACACACTCTGGTTAAAGGCATCATTGACAGCACAGTTGGAGAAACGAGACAGGTGGTGGCTGTGACTGGAGATGGCACTAATGACGGTCCTGCCCTTAAAAAAGCAGATGTTGGCTTTGCTATGGGAATTGCAGGCACAGATGTTGCAAAGGAGGCCTCTGACATCATCCTTACTGATGACAACTTCACCAGTATTGTCAAAGCCGTGATGTGGGGACGAAATGTCTATGACAGCATTTCTAAGTTTCTGCAGTTTCAACTGACTGTCAATGTGGTGGCTGTGATTGTTGCTTTCACTGGAGCCTGCATCACACAGGACTCTCCACTTAAAGCTGTTCAGATGTTGTGGGTAAATCTGATTATGGACACACTGGCTTCTTTGGCTCTGGCAACGGAACCCCCAACAGAATCACTCCTACTGAGAAGACCTTATGGCCGTGACAAGCCACTCATTTCCAGGACTATGATGAAGAACATCTTGGGTCATGCCGTTTACCAACTTATCATCACATTTACTCTTCTCTTTGCTGGTGAGAAATTCTTTAGCATTGATAGCGGCCGGAACACCCCTCTCCATTCACCACCGTCTGAACACTACACCATCATCTTCAACGTCTTTGTCATGATGCAGCTCTTCAACGAGATCAATGCCCGCAAGATCCATGGAGAGAGGAATGTGTTTGAGGGAATCTACCGGAACCCCATTTTCTGCTGCGTCATCATCATTGTGCAGTTTGGAGGGAAGCCATTCTCTTGCACGGCCCTCACCATCGATCAGTGGCTCTGGTGTGTGTTCATAGGTGTTGGTGAGCTGCTCTGGGGCCAGTTCATCACTGCCATCCCTACCCACCGCCTCAAGTTCCTGAAGGAGGCCGGTCACGGCATCCCCAAAGAGGACATCCCTGATGAGGTGCTAACTGAAGGTGCGGATGAAATTGACCTCGCTGAGATGGAGCTGCGCAGGGGACAGATCCTGTGGTTCAGAGGACTCAACCGCATCCAGACTCAGATTAAGGTGGTGAACGCATTCCGTAGCTCCCTGTACGAGGGCCTAGAGAAGCCAGAATCCAGAAGCTCCATCCATAACTTCATGTCCCACCCTGAGTTTGTACCCCTGTCCGAGGAGGAACCCCGCGTCCCCACGATAGATGAGGGCTGTGTAGAGATCGAGCAGCTCCCCTCCTCTTCCAGAAATGGAGGTGGT

Function

symbol description
atp2b4 Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Predicted to be integral component of plasma membrane. Is expressed in several structures, including blood; eye; gill; liver; and pleuroperitoneal region. Orthologous to human ATP2B4 (ATPase plasma membrane Ca2+ transporting 4).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K05850 ATP2B; P-type Ca2+ transporter type 2B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_01957358_02009847.mRNA True 3432 mRNA 0.51 20 1957358 2009847

Neighbor

gene id symbol gene type direction distance location
CI01000058_01838039_01842964 NA coding upstream 114128 1838039 ~ 1843230 (+)
CI01000058_01794468_01800421 KISS1 coding upstream 156937 1794468 ~ 1800421 (+)
CI01000058_01740599_01784355 PLEKHA6 coding upstream 172682 1740599 ~ 1784676 (+)
CI01000058_01625351_01664692 PIK3C2B coding upstream 291564 1625351 ~ 1665794 (+)
CI01000058_01580247_01591754 NA coding upstream 365105 1579663 ~ 1592253 (+)
CI01000058_02028188_02037502 MDM4 coding downstream 18302 2028149 ~ 2037628 (+)
CI01000058_02052152_02085378 NA coding downstream 42116 2051963 ~ 2085455 (+)
CI01000058_02227590_02229507 MYOG coding downstream 217571 2227418 ~ 2230021 (+)
CI01000058_02348646_02354404 TMEM183A coding downstream 338768 2348615 ~ 2355085 (+)
CI01000058_02379628_02392648 NA coding downstream 368737 2378584 ~ 2392780 (+)
G247950 NA non-coding upstream 16090 1927222 ~ 1941268 (+)
G247977 NA non-coding upstream 30326 1881180 ~ 1927032 (+)
G248152 NA non-coding upstream 80176 1876979 ~ 1877182 (+)
G248140 NA non-coding upstream 97378 1859734 ~ 1859980 (+)
G248139 NA non-coding upstream 99292 1857684 ~ 1858066 (+)
G248173 NA non-coding downstream 32324 2042171 ~ 2280818 (+)
G248208 NA non-coding downstream 80410 2090257 ~ 2092730 (+)
G248303 NA non-coding downstream 227063 2236910 ~ 2237958 (+)
G248356 NA non-coding downstream 307371 2317218 ~ 2321912 (+)
G247940 NA other upstream 500911 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 669088 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1360187 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1501614 434913 ~ 455744 (+)
G250039 NA other downstream 2684561 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2816529 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location