CI01000058_02028188_02037502 (MDM4)


Basic Information

Item Value
gene id CI01000058_02028188_02037502
gene name MDM4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2028149 ~ 2037628 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02028188_02037502.mRNA
ATATAAATGGGTTTCCTTACAGTTATTATTGATTCAATCATGACCTCACTGTCATCGACGTCATCTCAGTTGACGGGGTCAAGCTCTTCATGCAGGACTCTTCCAGGGGAAGGGACTCAGGTCCACCCCAGAGCTCCTCTACTCCAGATCCTGAGAGTTGCAGGTGCTCGGGAGGAGGTGTTTACCCTGAAGGAGGTCATGCACTACCTGGGTCAGTACATCATGATGAAACAGCTGTATGACAAACAGAGACAACACATCGTCCACTGTCAAGATGACCCACTCGGAGAGCTACTAGAAGTGGGGAGCTTTTCCGTTAAGAACCCCAGAGTTTCCTTCTCTGCGTCGCTGCTCCTTTCGGAAGGACTGCAGATTCCTTCTCAGTTCACTGGCCCTCTTCACCCCTCTGTCATACACCCATCCACATTTAACACCTTACGGTTGCGTGTTGGCAAAATGAAGTTAGGTGGGGTGTCCAGTGTGTCGATTAGCTCTGGACAGGCTCTCATTGCTAGCAGTACCAGCACTGGTGCAACACAAAGCTGCTCACAGCGCAGGCCACGTGATCCTGATGAAGACTCCTCAGATGACTTACCCAGGTCTGCTTGCAAACGGCCAAAGCTGGATGTGACTTTGGAAGAGTGGGACCTTTCTGGGTTGCCCTGGTGGTTTCTGGGTAACCTGCGAAGTAATTACACTCGCCGAAGCAACGGCTCGACTGATATTCACACCAATCAAGACGAGGACACGGCCATCGTTTCTGACACCACAGATGATCTTTGGTTCCTAAATGAGGCAGAAAGCGAGCAAGTGAGTGTGGAGATGAAGGAAGCGGTGCTGGAGCAGGGAAGTGATGCAGAGTCTCCACATGAAGAAGAGGAGACCGGGAAAGACAGTAAAGATGATAGGAAGATGCAAGAAGAACAGGATGATGACTCTCAGTGTTTAAGTGATGACACCGATACTGAGATCTCCACACAGGATGCATGGCAGTGCTCAGAGTGCCGCAAGTTTAACACCCCTCTTCAACGGTACTGCATGCGCTGCTGGGCTCTGCGGAAAGACTGGTACAAGGATTGTCCTCGTCTCGTACACTCCATTTCTGTTCCAGACATCCCCATCTGCAGTTCACGTCCTGAGAGGGAGGAAGACGAGGAGGATGATGGAATCGACATGCCTGACTGCCTTAGGACGGTGTCTGACCCTGTCGTCCTCCCCTCGCACCATGTCTCTAGAAACATCCCCTCATCATCTGCTTCATCGTCTAAAGGAAAGGGTCCTTCCCGCCTTCACCACCACTTACAGGAGAGCTCAGAGGGTGACAGCCAGGACACGCTGGACATGGAAACAGAATGCCATCCCGAGGCCATGCTAGAACCCTGCAAGCTGTGCCGAGTGCGGCCAAGAAACGGCAACATCATCCACGGCCGCACAGCTCACCTGATCACTTGTTTCCCCTGTGCCCGCAAGCTGCACAAATTTCACGCTCCTTGCCCAGGCTGTGGCCAGGTTATACAGAAGGTCATCAAAACCTTCATAGCATGACCGAAACATCTTAAAGGCACGCATGTATTAAACACGCACTCACTTGCTACTTAAAAAAAAAAAAAATGTTTCCTTGTACATAAACGCAAGGAGGCAGGGAAATCGACAAACCGTTGCTGGGCTAAA

Function

symbol description
mdm4 Predicted to enable p53 binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process and regulation of cell cycle. Predicted to be active in nucleus. Orthologous to human MDM4 (MDM4 regulator of p53).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10127 MDM4, MDMX; protein Mdm4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02028188_02037502.mRNA True 1671 mRNA 0.51 9 2028149 2037628

Neighbor

gene id symbol gene type direction distance location
CI01000058_01957358_02009847 ATP2B4 coding upstream 18302 1957358 ~ 2009847 (+)
CI01000058_01838039_01842964 NA coding upstream 184919 1838039 ~ 1843230 (+)
CI01000058_01794468_01800421 KISS1 coding upstream 227728 1794468 ~ 1800421 (+)
CI01000058_01740599_01784355 PLEKHA6 coding upstream 243473 1740599 ~ 1784676 (+)
CI01000058_01625351_01664692 PIK3C2B coding upstream 362355 1625351 ~ 1665794 (+)
CI01000058_02052152_02085378 NA coding downstream 14335 2051963 ~ 2085455 (+)
CI01000058_02227590_02229507 MYOG coding downstream 189790 2227418 ~ 2230021 (+)
CI01000058_02348646_02354404 TMEM183A coding downstream 310987 2348615 ~ 2355085 (+)
CI01000058_02379628_02392648 NA coding downstream 340956 2378584 ~ 2392780 (+)
CI01000058_02578534_02589495 NA coding downstream 540433 2578061 ~ 2590541 (+)
G247991 NA non-coding upstream 24982 1998870 ~ 2003167 (+)
G247950 NA non-coding upstream 86881 1927222 ~ 1941268 (+)
G247977 NA non-coding upstream 101117 1881180 ~ 1927032 (+)
G248152 NA non-coding upstream 150967 1876979 ~ 1877182 (+)
G248140 NA non-coding upstream 168169 1859734 ~ 1859980 (+)
G248173 NA non-coding downstream 4543 2042171 ~ 2280818 (+)
G248208 NA non-coding downstream 52629 2090257 ~ 2092730 (+)
G248303 NA non-coding downstream 199282 2236910 ~ 2237958 (+)
G248356 NA non-coding downstream 279590 2317218 ~ 2321912 (+)
G247940 NA other upstream 571702 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 739879 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1430978 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1572405 434913 ~ 455744 (+)
G250039 NA other downstream 2656780 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2788748 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location