CI01000058_02052152_02085378


Basic Information

Item Value
gene id CI01000058_02052152_02085378
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2051963 ~ 2085455 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02052152_02085378.mRNA
GTATATAAAGCTAGCATACTATATAGTTTAGTCACTGTTATGCAATTGTTACTGTAAAGAATGTAGATTATCTTGGTTTCTATCAAAACACTTTGCATGCTTCTCAGCCTGTATATTGTAAAGAGCTCCTCTGAATTAGTTCTGGGACATTCCAGTTGAATTTCACTGCACGTCTTGTAGATGGCGAAAATGACTGCTGTGAAAATACGAGAGAAATGCTGGCTGAAATTTAAGCTTAACATTGAGTGGAAAAGAAAAAAGGTCTGTTTGCACTCTAGCAGTAATGCAGATTTGCCAGACTCTATGAATAATTCTTTGTGGTTGCACACACCTGGAAACAATTGCCCGGTCCTCAAAGAAGAGGCTGATACGAAACATGGAGAAGGGCCCTTGAGCTTGCCAGCATTGGATTTACCCAAGGCCGTCCAACGTCAACCACTGCCTCGTAAACATGAACTTGGTGTCATTGTGACTCAAAGCCAGGCTAATCCACCATCGCCAGAGATGGAATCAGATTGGGGATTTTCATCTTGTTATCTTTGCCTTCATCAGCATGAGTCTGCCTTACCAGGGCTTTGGGCAATTCCTCCAGGGGATGGAAGGAGCCACCGTCATTTATTTCTTGGAAGGAGCTATTGCAGTGCTCGCTGCAGAGTTGCCATGGAGATCTGCCTCCGTGTTTCACAAGTTCAAAGATACAATGCAATATATTCTTTCTTGCTTGGTGCTAAAGTGATGCACAGTATCCCCTCTGAAATAGTGATGACTCGGCCTGAAGACAAACTGGCAGGTGTTTGGAACCAGAGAATGGAAGCACAGAGGCCTTCTGGCATGGTTGGAGGCCACATAGGATGTCACAATGCTACTGTGAGTTTTGAAAATGTCATCCTTGTGAAACGTGGTTCATTTCAGGCGACAGGTCTGAGGAAAAAGGTATTTTCAACCGAGGCTGCTCTTAACAGGATGAATCAAATCCTTCGCACATCGTGCCAGAATTATACAGAAGGCTGTTGGATTGCCGCACACGGCCGCTGTCTGCAGCCTCCAACATTTGACAGCACTACATTTTACCATGACTGCCCAGGTTCTCCCAAGGGTTATATTAGCCTGGAACGATCCGGAACAGCACTCACCTCTGACATGCTCTAGTAGTACATAAAGAAAGAAAATATACTCTGTCTTTATTCAGTGAGTGCATGTGCTTTAAAACATAAAAATTGATTACA
>TU281690
AGATTGAGGCTTGACAGATGTGTGCTTGAGAGAACATATCGCCACTTTTACTTTTCTTGACTAATAATGACAATAACAGCCACACAGCATTAAAAACTAAATTCCAGCACCATATCGCCACTCATTATAAAGCACTGACAAAATGAAACCTCCTGCACAACAATTGGAGATGCATGTTCTGTGTTAGATGACACAATCATAAATTCATAAAGTGGTAGGGACAAAATTTACCATGGCAAACTGAGGTGGGGACTCATCTATGCTAATGTCCTGTACAATAGTGACCAGACTTCCCATATTATCCAAAGCTACTGCTTTTCCAGCATCTGTTTGTGTTTATTTGGTTGCAAGTAATCCTTATTTGTTCCAGTCTTTGCAAGAGTTGTTTGTTTTCGAGGTACGTGCACGCACACACACATAACTTATGCATACGCAAGCTTGGTTTATGCCAAAAAGTGAGATCCACACCTGGTTTCACTAACCCCTGAGACAAAGAAGAAAGCTTTTGAATAATAACAAGGGGAACAACACCTGAAGCTGCAACTGCACAAGTTAATTGAATATTCCTTTTTATTCTCAGAAGAGGCTGATACGAAACATGGAGAAGGGCCCTTGAGCTTGCCAGCATTGGATTTACCCAAGGCCGTCCAACGTCAACCACTGCCTCGTAAACATGAACTTGGTGTCATTGTGACTCAAAGCCAGGCTAATCCACCATCGCCAGAGATGGAATCAGATTGGGGATTTTCATCTTGTTATCTTTGCCTTCATCAGCATGAGTCTGCCTTACCAGGGCTTTGGGCAATTCCTCCAGGGGATGGAAGGAGCCACCGTCATTTATTTCTTGGAAGGAGCTATTGCAGTGCTCGCTGCAGAGTTGCCATGGAGATCTGCCTCCGTGTTTCACAAGGTCAGTGTGAAAGTTGAAGGAGCTCTGCATAACAGGTCTGCTCCTTCACACAGCCGACTAAAAATACTGAAAAACATTTGAATTAAAACTTGTGTTTTTTTAAATCAATTGTTTTAGTTTTATAGCAGATCTTATTGATCTGCTATAAAATTCATAATCTGACATATTTCTGAGTAAACAGGCTATGCAACAAGGAATAGAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02052152_02085378.mRNA False 1226 mRNA 0.44 9 2051963 2085455
TU281690 True 1115 lncRNA 0.41 2 2059042 2061224

Neighbor

gene id symbol gene type direction distance location
CI01000058_02028188_02037502 MDM4 coding upstream 14335 2028149 ~ 2037628 (+)
CI01000058_01957358_02009847 ATP2B4 coding upstream 42116 1957358 ~ 2009847 (+)
CI01000058_01838039_01842964 NA coding upstream 208733 1838039 ~ 1843230 (+)
CI01000058_01794468_01800421 KISS1 coding upstream 251542 1794468 ~ 1800421 (+)
CI01000058_01740599_01784355 PLEKHA6 coding upstream 267287 1740599 ~ 1784676 (+)
CI01000058_02227590_02229507 MYOG coding downstream 141963 2227418 ~ 2230021 (+)
CI01000058_02348646_02354404 TMEM183A coding downstream 263160 2348615 ~ 2355085 (+)
CI01000058_02379628_02392648 NA coding downstream 293129 2378584 ~ 2392780 (+)
CI01000058_02578534_02589495 NA coding downstream 492606 2578061 ~ 2590541 (+)
CI01000058_02592534_02600835 NA coding downstream 505738 2591193 ~ 2601755 (+)
G247991 NA non-coding upstream 48796 1998870 ~ 2003167 (+)
G247950 NA non-coding upstream 110695 1927222 ~ 1941268 (+)
G247977 NA non-coding upstream 124931 1881180 ~ 1927032 (+)
G248152 NA non-coding upstream 174781 1876979 ~ 1877182 (+)
G248140 NA non-coding upstream 191983 1859734 ~ 1859980 (+)
G248208 NA non-coding downstream 4802 2090257 ~ 2092730 (+)
G248303 NA non-coding downstream 151455 2236910 ~ 2237958 (+)
G248356 NA non-coding downstream 231763 2317218 ~ 2321912 (+)
G248372 NA non-coding downstream 313231 2398686 ~ 2398891 (+)
G248373 NA non-coding downstream 314930 2400385 ~ 2400642 (+)
G247940 NA other upstream 595516 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 763693 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1454792 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1596219 434913 ~ 455744 (+)
G250039 NA other downstream 2608953 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2740921 4864571 ~ 4888216 (+)
G247969 NA non-coding upstream 2751 2003297 ~ 2056291 (+)

Expression


Co-expression Network