CI01000058_02227590_02229507 (MYOG)


Basic Information

Item Value
gene id CI01000058_02227590_02229507
gene name MYOG
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2227418 ~ 2230021 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02227590_02229507.mRNA
GTTTAAATGCCACCACTGCAGTTGGTGTGGAGCAGTTGTCGTCCACAGATCTTCTTCAGCACGAGCTCAGCTCCGGGGGAAACACCCACACACGCTCGCAAGGACCGTAAAGGACCTATAACGCTTTCAGAGAAGACACAGCAGAGCCGGTGGACTCTAATTCCAGCAAGACATGGAGCTTTTCGAGACCAACCCCTACTTCTTCGCAGACCAGCGTTTTTACGAAGGCGGCGATAACTTCTTCCAAACCAGGCTGACAGGAGGCTTTGACCAAGCAGGATATCAGGACAGAAGCTCCATGATGGGCTTGTGTGGAGACGGACGGCTGCTGTCCAATGGAGTGGGGTTGGAGGACAAACCGTCTCCATCATCTAGCCTCGGTCTGTCCATGTCTCCTCACCAGGAGCAGCAGCACTGTCCGGGTCAGTGTCTGCCTTGGGCCTGCAAGGTGTGTAAGCGCAAGTCGGTGACCATGGACCGACGGAAAGCCGCCACACTGAGGGAGAAGAGGAGGTTGAAGAAGGTCAACGAGGCCTTTGAGGCTCTTAAGAGGAGCACACTTATGAATCCCAACCAGAGGCTGCCTAAGGTGGAAATCCTGCGCAGCGCCATCCAGTACATCGAGAGACTGCAAGCGTTGGTCAGCTCTCTCAACCAGCAGGAACATGAGCAAGGAAACCTGCATTACAGAGCTGCAGCTCCTCAAGGGGTGTCGTCCTCCAGCGAGCAGGGCTCTGGTAGCACCTGCTCCAGCAGTCCAGAGTGGAGCAGTGCGTCGGAGCACTGCGCCCCCGTCTACAGCTCCACCCACGAGGATCTCCTGAATGACGACTCCTCAGAGCAGACCAACCTGAGGTCTCTGACCTCTATTGTGGACAGCATTACAGGAACAGAGGTGACTCCAGTGCCCTATACAGTGGACATAAGCAAATAAATGAGGAGGGTGAACCTACCGTTAAGTTCAGATCACCTTTCACCGACCATAACAGCACTATCTACGACACCCAAGGTGAATGAAGAACCTTTTAAAAAGTCATAAAAGCCTTGGGGGCTTAATTTCCAGACAAATCTTGAGGTCCATATGATTATATTTCCAAATGTTTCTTATCCCTATGGAAGAGATTGTGGAATAAGAACGAATTTCAGATCAGCCTAATTCCTGCTGAAACTTAAGACAGTCAGGCTGGGTAAATCATATTTTCATAATTTGTCCTTTTTTTCCTCTCAATTCCTTTATTTTTTCATTCTGTTTGTGTGTGCTTTATGCTTACCAACAAAAACATTTGTGGGTCCAATGTTTTACTTCTGGTTTTGACCAATTTCTGCTTAATTTAAACTAGTTCCTAATGCCAGTCATGTAAATATGTTCCTATTTTCTACAGAGTGGTTTTGTTATTTTATTTTGTATTTTTTCTGTGTGTTTGGAATAACTTATTTGGACTTTTATA

Function

symbol description
myog Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including positive regulation of myoblast fusion; response to activity; and skeletal muscle tissue regeneration. Predicted to be located in nucleus. Is expressed in several structures, including mesoderm; musculature system; myoblast; post-vent region; and trunk. Orthologous to human MYOG (myogenin).

NR:

description
Myog protein

GO:

id name namespace
GO:0007517 muscle organ development biological_process

KEGG:

id description
K18483 MYF4, MYOG; myogenic factor 4 (myogenin)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02227590_02229507.mRNA True 1448 mRNA 0.48 3 2227418 2230021

Neighbor

gene id symbol gene type direction distance location
CI01000058_02052152_02085378 NA coding upstream 141963 2051963 ~ 2085455 (+)
CI01000058_02028188_02037502 MDM4 coding upstream 189790 2028149 ~ 2037628 (+)
CI01000058_01957358_02009847 ATP2B4 coding upstream 217571 1957358 ~ 2009847 (+)
CI01000058_01838039_01842964 NA coding upstream 384188 1838039 ~ 1843230 (+)
CI01000058_01794468_01800421 KISS1 coding upstream 426997 1794468 ~ 1800421 (+)
CI01000058_02348646_02354404 TMEM183A coding downstream 118594 2348615 ~ 2355085 (+)
CI01000058_02379628_02392648 NA coding downstream 148563 2378584 ~ 2392780 (+)
CI01000058_02578534_02589495 NA coding downstream 348040 2578061 ~ 2590541 (+)
CI01000058_02592534_02600835 NA coding downstream 361172 2591193 ~ 2601755 (+)
CI01000058_02629861_02631891 NA coding downstream 399669 2629690 ~ 2632294 (+)
G248208 NA non-coding upstream 134688 2090257 ~ 2092730 (+)
G247969 NA non-coding upstream 171127 2003297 ~ 2056291 (+)
G247991 NA non-coding upstream 224251 1998870 ~ 2003167 (+)
G247950 NA non-coding upstream 286150 1927222 ~ 1941268 (+)
G248303 NA non-coding downstream 6889 2236910 ~ 2237958 (+)
G248356 NA non-coding downstream 87197 2317218 ~ 2321912 (+)
G248372 NA non-coding downstream 168665 2398686 ~ 2398891 (+)
G248373 NA non-coding downstream 170364 2400385 ~ 2400642 (+)
G248374 NA non-coding downstream 171842 2401863 ~ 2402123 (+)
G247940 NA other upstream 770971 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 939148 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1630247 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1771674 434913 ~ 455744 (+)
G250039 NA other downstream 2464387 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2596355 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location