CI01000058_02348646_02354404 (TMEM183A)


Basic Information

Item Value
gene id CI01000058_02348646_02354404
gene name TMEM183A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2348615 ~ 2355085 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02348646_02354404.mRNA
CGATAAAAGGCCACAGACCCCCGCTCTCGTCATGCCCAAGAAAGGGAACCGAAAACGGCTGAAATTTAAAGCCGAGGATGTTTGCTCGGAGTCAGTAACTGTGGCTGACTATGCCAACGCCGATCCAGCCATCGTGAAGTCCGGACGAGTTAAAAAGGCTGTTGTTAATGCAATTGAAAAAGAAGTGAAATTACTCTGTGGACTCGAGGCATCTCAGGGTCCTGTGCAGGAAGTGCTCTCGTCTGCAGTCGGTGTGAGGAACACAGCCCATGAGAGCAGTGACGAACTGGACTCAGAGGAAGGGGATGAAATCAAAGGGTCCCGCAAAAAGAAAAATAAAAGACGCAAAGGGCATTTATGCATGACTAAATTCCCTCTTGATGTTTTTTTACCTTTCCCCAGGCACTATAATCTTGATGCAGAACTCCCTGATCGCCTTCAGCCTGATTCTATCGCAAGGATGCATTGTCTTCGTGCCCGTGTGATTCGCTCGCTTTTTCACTTATATGAGCCCTTTAGCTCACGGGTGTCCAGAAGCCCTCCTCTTCCTGAATCTACTCCTACTACACTCCTCAATTCCAAGTGTTTGTTGTTTTGGATCAACAAAGTGTCTGGAAGTAGGTCAGAGCCGATGTGGGAATTCAACTTCAAGTTTGTAAAACTGCCAACCAAGGGCAAAAATGGATGTAGTTTGGGTCTTCAGCTGCCCAAGCAGTATAAAGATGTTCACACTAATCCAGACTCAGACTGTTATCTACTGCGGGTCACTACCCTCAATTTCATTTTTACTTCTGTTGTGATGGGCATGACGTTAACTTTGTTCACCATTAATGTGAGCACAGACATGAGGCACCACCGAGTGCGCCTGGAGTTCCAAGACTCGCCAGTCATTCGAGGAAAGAAACTTAGGGGTGAGCAGGGGGTGCAGGTAGTGCTGGACCCTGTCCACAGCGTGCGCCTCATGGACTGGTGGCACCCTCAGTACCCCACATCTTCATATAATTAGACTGATGAACTCCATCAACCTCCTCAATTACAAAAATATTGCAGAAGACAATTCAGGCCTGTTTCAACCATTTTAAATTCCTGAGTTGGCTTGGCAGTCACTAATTTCTGTTGAATTTTACGCTCTACACTTATCGTGCTGCTTTTATGGACACTTTAGTTTGATCAGAATCCTAACTCAAGGTCTCAAGACATTGTAGGAGGAAATTGCCTTTAATAGTTCAGGTAGCTGCCATATTTAATTTGACATAATTGAAAACAATGTGGGATATGCCATACTGTCATTTTCAACCTGTGTTTTTCTGGAGGGTTTTTTTTTCCTTCCACTTCCAGTGATCAAATTCCAAGTACACAACCATACTTTCTGAACAGACTGTGCTTGCCTCTCTCAGTTTTCATGTATGGCAAAAAAAAAAAAAAAAAAGTCATGACTTCTACATCAGAAGTACATGGCATGGTTTTCTTTCCTTTGAGAATAATTAGGAAATTCCACATCAAATAATCATAACATTTGCATTACTGCAGGACTCTAATCTTAAATCATGTGATTTAATAGTTAGTTGTTTTTGTTTTTCTTCTATTGCATACCCAAGATTCACCTGAACCTGATTTTTCTCACTCGTTCTCTGCAAATTTGTGAATCGGTAAACTGGATGAACATTCAAATCTATGACCAAAAAAA

Function

symbol description
tmem183a Predicted to be involved in regulation of protein stability. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human TMEM183A (transmembrane protein 183A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02348646_02354404.mRNA True 1687 mRNA 0.43 7 2348615 2355085

Neighbor

gene id symbol gene type direction distance location
CI01000058_02227590_02229507 MYOG coding upstream 118594 2227418 ~ 2230021 (+)
CI01000058_02052152_02085378 NA coding upstream 263160 2051963 ~ 2085455 (+)
CI01000058_02028188_02037502 MDM4 coding upstream 310987 2028149 ~ 2037628 (+)
CI01000058_01957358_02009847 ATP2B4 coding upstream 338768 1957358 ~ 2009847 (+)
CI01000058_01838039_01842964 NA coding upstream 505385 1838039 ~ 1843230 (+)
CI01000058_02379628_02392648 NA coding downstream 23499 2378584 ~ 2392780 (+)
CI01000058_02578534_02589495 NA coding downstream 222976 2578061 ~ 2590541 (+)
CI01000058_02592534_02600835 NA coding downstream 236108 2591193 ~ 2601755 (+)
CI01000058_02629861_02631891 NA coding downstream 274605 2629690 ~ 2632294 (+)
CI01000058_02635467_02636768 NA coding downstream 280091 2635176 ~ 2636985 (+)
G248356 NA non-coding upstream 26703 2317218 ~ 2321912 (+)
G248173 NA non-coding upstream 67797 2042171 ~ 2280818 (+)
G248303 NA non-coding upstream 110657 2236910 ~ 2237958 (+)
G248208 NA non-coding upstream 255885 2090257 ~ 2092730 (+)
G248372 NA non-coding downstream 43601 2398686 ~ 2398891 (+)
G248373 NA non-coding downstream 45300 2400385 ~ 2400642 (+)
G248374 NA non-coding downstream 46778 2401863 ~ 2402123 (+)
G248384 NA non-coding downstream 61168 2416253 ~ 2416481 (+)
G248404 NA non-coding downstream 100602 2455687 ~ 2456585 (+)
CI01000058_01794468_01800421 KISS1 other upstream 550883 1794468 ~ 1800421 (+)
G247940 NA other upstream 892168 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1060345 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1751444 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1892871 434913 ~ 455744 (+)
G250039 NA other downstream 2339323 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2471291 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G192773 NA non-coding NC_053130.1 CM020927.1 10229462 ~ 10229898 (+)
mexican tetra (Astyanax mexicanus) G192944 tmem183a,LOC107656009,LOC107727871,LOC107739272 non-coding NC_035918.1 CM008321.1 25775397 ~ 25779194 (-)