CI01000058_02883775_02884290


Basic Information

Item Value
gene id CI01000058_02883775_02884290
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2882164 ~ 2885704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02883775_02884290.mRNA
GTTTAAAATTGACCCTCTCAATCATTATGCACGGTTGGTCTTCTTGACAGCTCAAATGGTTTTCAGACAATTAGTCCTGTGCAGTGTTTACTACCATCACTCAATGTGGCTTCCTTTTTACATCACTTCTGATATGTATAGCTGGTTAAGGGTTGGGGTCGCTGGTCCCTGGTGGTTATGCTCTGTTTATCAGTCATTAGAAGAACTAGACTGGACTTAATAGACTGTAAAATTGTTTTGTCAATGCTTTATCAAATGACATGTATTTCTTTTTTTCTTTTTTTTTAATATACAATATATTTCATATAACTTATTTTTATATCTACTTACGGGTCAATGACGTGACGAGTCATTTTTTTGTCCAAAAGCCTTAATAATAATAAAAAACAAAGATATGACATCCAAAGTATGTAAGGAAGTACAACTAGATCTCTTTTATTCAATTCAAAAGGTTTTAATTATATTTTGCTACATATATTTTAAAGATTTTGAAGTGTCAAAAGGTCATTCGGTTTAACCATCCAAAGGCCAATACAGCCATTTCATTTGTGATTAAAATAACTTAAAATGCAATAAATGTATATATTTTTTTATTCTGGCATGATTTTATAACATCATATATTAACATAGTGCAAAATGGTATTAAAATTATGTGTAGAAGTCGTTGCTTTGTTATGAGAAAGAATGTCCGGAAAAATTAATTTCATTTATGTCATTCGGAGTAACCAATATAAAGGGACCATTTTGGATCAAGTTGTGCGGTCAATATCATGTGACAATATCATGTCCCAAAACATCAGGTCATTCGGTACAACCGCTATAAAACATGGAAAATGTTGTAATATTTTAAAAACTTGAACTAAATATAAATATTTTGATTGTCCTTTTGCTAGCTAGCTAGATATCAGACTGTTAGACTGTTGTTTGAAAATATTGTCATTCGGTATAACCAAAAGTGTCATTCGGTAAAACCAACTTTTTTTGGTGACAAATTATGTCTATCTTGTAAAAAATGACAAAAGCAGTGCTTGATTGATTATAAAAACCACATAATCTTATTGTTAACACTTAATAAAACTTAAAAATTAATTATATCTCCATTGTGTTTTTTTTTACACTTTTAAAAACCTTATTCGTCAATGACCTGTATATTACATATACACATTTTACTTTTTACTTTTTGTTTGAAGACTCTCTGGTTTAGTGTTTTTTTGTTGTTGTTGTTTTTTTCTTTGAATGAACATCTAGCAGTTGAGGTCCTCCTGTAATTTTTTATGGGGTCGTTTAGAGGTGATAAACTGTGAAACAACATCTTATCAGTTGTTGAAGAAAGCTCAGTATTGTGTGTGTATTTGGACGCTTTTACTCACTGGAAGAAATTTTTTTCTCGCCCTTAGCAGTGTGACAAGTACATCAATAATTAAGCAGCTGATGAAGGGAACACAAAGCAGGCAGCAGAAGCCACCAAACAACTCCTTTCACTTTCTCTCATCCTCTTCCCTGTTCTCTGGCCATTACAGGGAAACCCTAGCCCAGCATTTATTAGGTGAGCCTATGCCCTTGGCTTCAATAACAAACAGCGCTGCCTAATCCCACAAGCACTGGAGATCCATGAAGATAGGTGTGTGGGAAGAGACTGGGGAGTTTTGTGCTGGAAGATGGAGAGGAATATCCGTCATGTGGCCCAATCTTATTTGTTCAGCTCGGAAGAGCCAGAATCCTTCGTCCTCCTGGTTTCTCAAGCGACAAGAAGGAAAGGGTGTGGCTGCGAACACAGAGAACAGCCATTGTCTTCCTACAGTATCTTACATTGGAACAGATATTGTGTTTTTTACAACCGCAGTAGCTGAATGCATACAGTGCATCAATGCAGGCCTTTCTCTTGGAGCCCCAGTCTCATGCTGTGTCCATTTTGCATTGTTTAATGACGCCTGTTGGGGGGATTCTGGCATCCCGCCACTGACCTCTGCTCTCAGCGGCCCCGAGCCTGTCAGCACCGTTTCCATGGCAACAGGAGACACCCAACCACAATGGCTAGAAACAAACTAATGCATCATGTTGCCGTGGAACACTTGGATGAACGGCACAATGGCGATCGGAGCTCAGTCCCAACCGTCTGTCATCAGGCTACATCTGAGCTGTATTTGCTTTGTCGCAGCTAATGTGCAGTTGACTGTGAATATGAATGTGATACAGAGACTGTTCTCCTCCCCCCACCAGCTTCACAAGCTTTGCCTCATTTAGCAGTCTGACTCCATTGCTCTGGAATGGACTTGTATGTATTTATTTAGAAACAATAAGTTACCAACCTATTCGCTTTGAAAAACAAATCAACTGATCTTTCTTTTAAAGTGATGACATCTTTAACTTGATTTTGGCTCGAAAGTTTAGTGCATTTGAGAGAAATACCATCAGATGTTCGCAGTCTCCTAACTAGTAAGTTAGTATAAATGAAAACAGATTAATTCCCTTTTTTTTCTTTCAAGTGGCCCACCTCAAATGGTTTCACAAGACCCCTCCTGAGGATCCAATATCCTGCTTCTGCAACACAGGGGTCCTTCATAATCCTCTCCCACCACTCCCATCTTTCTAAACCACATAAACCATCTTGAAATGGATGAATGTAAAGTCGACTGATGCTCGGGTGACCGTTTTGGTTTCATTGTAGATTTTTAAGCTAGGTGGAGGTCAAATGCTATATAGACACATGCTGATTCTCCAATGCAAAACTGAATCTCACATTGCCAATCACTGGGAAGTAAAGCTAAGCTGTCTGGCTTCCAGGCACTGTGGAGTGAGTGTTCCTGAGTCAAATGCATCTCAAGGGATCTTTTAAGCAACTTTATGTGCAGCCGGGTAAACTTAATACTATGTACAAATGAATTTTAAATTGTTGTTCAGCTCAAATCTTCGGTTGATTCTTGCTGGCTTCAGCAAAGGCTACTTCACAATATGTCCAAAATGTTGAATTCCCTTATTAACATAGTGGTTATTCACAAGTAAACATTTCAGCATTACCATAATCACCATAATCACAGCAGGCTAATCAGGTTTTGTAGTTCTCCAAATTGCCTTTTTCCATCATGTGCACAATCTGGAGATATTTAGCGCTTGTAAATCCGATTATTCACGTTGATATTATGCAGTGTTATGCAGTGCCAAATGCCCCGGTGTTTTAATGGAACTTTCTCCTCATCATTGAAGGACGATCTTGCACTATTGTGCAGAACCAGAAAAAAAGACTAAAATGACCTTTTTACAGAATTGCTTGATTTAAAGACGGTTGTTCAAACGAATTTCAGTTTATAGCTTTTATAGATTCTATCAACAGTCACTGATGTGTGCTGTGATGAAGAAATGTTTAGTATATGGACTATGGTAATTTAAGTTATAAACCTATATAAACTAGGATATTTTTTCTAGTTTTATTTATTAAAATTGTGCCAAGTAAGTCTACCTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02883775_02884290.mRNA True 3463 mRNA 0.37 2 2882164 2885704

Neighbor

gene id symbol gene type direction distance location
CI01000058_02650808_02653235 NA coding upstream 228793 2650436 ~ 2653371 (+)
CI01000058_02635467_02636768 NA coding upstream 245179 2635176 ~ 2636985 (+)
CI01000058_02629861_02631891 NA coding upstream 249870 2629690 ~ 2632294 (+)
CI01000058_02592534_02600835 NA coding upstream 280409 2591193 ~ 2601755 (+)
CI01000058_02578534_02589495 NA coding upstream 291623 2578061 ~ 2590541 (+)
CI01000058_02911431_02958568 SRGAP2 coding downstream 25727 2911431 ~ 2958568 (+)
CI01000058_02964886_02978501 IKBKE coding downstream 79182 2964886 ~ 2978895 (+)
CI01000058_02979997_03027744 RASSF5 coding downstream 94293 2979997 ~ 3028144 (+)
CI01000058_03034418_03038200 DYRK3 coding downstream 148714 3034418 ~ 3038344 (+)
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding downstream 180375 3066079 ~ 3101574 (+)
G248574 NA non-coding upstream 3376 2867222 ~ 2878788 (+)
G248519 NA non-coding upstream 196530 2685275 ~ 2685634 (+)
G248516 NA non-coding upstream 208502 2673375 ~ 2673662 (+)
G248432 NA non-coding upstream 381847 2500110 ~ 2500317 (+)
G248566 NA non-coding downstream 5647 2891351 ~ 2908197 (+)
G248594 NA non-coding downstream 78789 2964493 ~ 2964823 (+)
G248613 NA non-coding downstream 222069 3107773 ~ 3108154 (+)
G248614 NA non-coding downstream 223305 3109009 ~ 3109249 (+)
G248568 NA non-coding downstream 226080 3111784 ~ 3114371 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1084432 1794468 ~ 1800421 (+)
G247940 NA other upstream 1425717 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1593894 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2284993 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2426420 434913 ~ 455744 (+)
G250039 NA other downstream 1808704 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1940672 4864571 ~ 4888216 (+)

Expression


Co-expression Network