CI01000058_02911431_02958568 (SRGAP2)


Basic Information

Item Value
gene id CI01000058_02911431_02958568
gene name SRGAP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2911431 ~ 2958568 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02911431_02958568.mRNA
GAGATCCGAGCCCAGTTGGTGGAGCAGCTTAAGTGTTTGGACCAGCAATGTGAGATCCGCGTGCAGCTCCTGCAGGACCTGCAGGACTTCTTCCGCAAGAAGGCAGAGATCGAGATGGACTACTCCCGCAACCTAGAGAAACTAGCCGAGAGGTTCCTGGCCAAGACGCGCTACACAAAGGACCCTCAATTTAAGAAGGAGCAGAATGTCTTGTCTCCAGTCAACTGCTGGAACCTTCTCTTGGCTCAGGTGAAGAGAGAGAGTCGAGACCACGCCACTCTCAGCGATCTCTACCTCAACAACATCATCCCACGCTTCGCCCAGATCAGCGAGGACTCAGGACGCCTCTTCAAAAAGAGTAAAGAGGTGGGCCTCCAGCTACAGGAGGATTTGATGAAGGTCCTCAATGAGTTGTACACGGTGATGAAGACCTATCACATGTACAATATGGACAGCATCAACGCTGAGAGCAAGCTGAAGGATGCAGAAAAGCAAGAGGAGAAGCAGATGAGCCGCAGTGTCCGACACGAGGACAGGCAGACACCGCGCTCACCCGACTCCCTCACCAGCATCAAGATCGAGGAAAAACATGTGCGCCGCAGCTCCGTCAAGAAGATTGAGAAGATGAAGGAGAAGCGGCAAGCAAAATACACTGAGAACAAGCTGAAAGCCATCAAGGCCAGGAATGAGTACCTTCTTGCTCTGGAGGCCACCAACAGCTGCGTGTTCAAATACTATATCCATGATCTGTCTGACCTCATAGATTGCTGTGACCTAGGCTACCATGCCAGCCTGAACCGTGCACTGCGTACCTACCTCTCGGCTGAGTTTAACGTTGAGACTTCCAAGCACAGTGGTCTGGAGACCATCGAAAATGCTGCAGAGAACCTGGAGGCCAACGCAGACAAACAAAGGCTCATGGAGACCTACAACAATGTCTTTTGCCCTCCGATGCGCTTCGATTTCCAGTCTCACATGGGTGATATGGTGGGACATATGTGTGCCCAGCAGCCTGTACAGGTAGAGCTGATCCAGAGATGCCAGCAGCTACAGTCCCGCCTGTCCACACTGAAGATAGAGAATGAAGAGGTGAAGAAGACGATGGAGGCCACTCTACAGACCATCCAGGACATGGTGACCATTGAGGACTTTGATGTGACTGACTGTTTCCACCACAGTAACTCAATGGAGTCAGTCAAGTCCACTGTGTCTGAATCTTTCATGAGCAAACCCAGCCTAGCCAAGAGACGAGCCAACCAGCAGGAGACAGAACAGTTCTACTTCACGAAACTGAAGGAGTTTCTGGAGGGCAGGAACCTCATCACCAAACTACAGGCTAAACATGAACTGATCCAAAAGACTCTGGGAGAAAGTGAAGCTTCTCTTTCTCTCTCCATCAGCGGACGGAGGAACTCCACTGTGCGAAAACAGGAGCCCAGCCAAATCATTCCCCTGATGGTGGAGAGTTGTATTCGCTTCATCAGTCGACATGGTCTCCATCACGAGGGGATATTCAGGGTGTCTGGCTCCCAGGTGGAAGTCAATGACATTAAGAACGCCTTTGAAAGAGGTGAGGACCCGCTAGCTGGGGATCAGAATGATCATGATATGGACTCCATCGCTGGAGTGTTAAAGCTCTACTTCAGGGGCCTGGAGCACGCCCTCTTTCCTAAGGAAGTCTTCCATGACCTAATGTCCTGTGTCTCCATGGAGAACCTCCAGGACAGAGCTGTCCACATCCGCAAAGTCCTGCTGTCACTACCCAGCAACACCTTGGTTATCATGAGATACCTGTTCGCTTTCCTCAACCATCTGTCCCAGTACAGTGATGACAACATGATGGACCCCTACAACCTGGCTATCTGCTTCGGCCCCACACTCATGTCTGTGCCTGAGGGCCACGACCAAGTCTCCTGCCAGGCACATGTGAATGAGCTCATCAAAACCATTATTATCCATCATGAGAGCATCTTTCCAGGGCCCCGTGAGCTGGAGGGGCCCATCTATGACCATGGAGGAGCCACTGAGGAATACTGTGATAGTCCACACATTGAGCCCCCCCTAGTGGATGAACCTGCTCCTGACACCACCTCTGAAATCCACAACAGCGATGATGTAAAGTCAGGGTCCTTGAACGTTTCAGAGTCTGACCCCATCGAGGCCATTGCACGTTTTGACTACTCTGGACGCACCAACCGCGAGCTTTCCTTTAAGAAGGGGGCGTCTTTGCTGCTGTACCACCGTGCATCTGATGACTGGTGGGAGGGTCGCCACAACGGCACAGAGGGACTCGTGCCGCACCAGTACATTGTAGTGCAGGACATGCCTGATGGATATGCAGGCAGAGGAAGTCCCAAAGCTGACCTAGAGGCATCCCATGATGCTGTGGAAGAGAAAGTGTCTACCAGAGCCAGTGCCAGTTCACCCATTGGAGGTCATGTGGCTGATATATACCTAGCTAACCTCAACAAGTTGAGGAAACGTCCAGAAGCAACCAGCATCCGGAGAACAATCCGGGCAGTGGAGGGGCTTGGTGAGGGCTCATCCGGAGCAGCAGGGGGTTTAAAGACCTCCTCCATGCCTGCAGGTGGACTGGCCAAGGAGGGGACAGACAAGCGACCAGTCAGCGCTCACAGCGTCCTGAACTCCATCACTCGACACTCGTCTCTGAAGACTAAGGTGGAAGGTCCTCAGCTCCGTAAGTCCACGCCTGCAGGACGATCCAAGAGTTTCAGCAATCACAGACCACTGGACCCGGAGGTCATCGCTCAGGTGGAGCACAGCTCACAGGACATTGAGGCCACTATGAACACAGCTCTAAGTGATCTCCGAGAGCTGGAGAGGCAGAGCAACGTCAAACACGCTCCTGACGTTGTGCTTGACACTCTAGAGCAGCTAAAAAGCGGCGGGGCTTCTGAACCCTCCAGCCCGCTTCATTCCCGCCTGCTCCGTGAGGCCGACTCCTCCCAGCATCCTCTGCAGCGCAGCGCCAGTTCGGCCAGCGACATGCCCTCCACCTTCCGGCCCGGCAAGAGTGCCAGTCCCAAGAGCCCTCTTTCTTCAATGTCTACCACAGGTCTATCTGCTTCCGGCTCCACCTTCAGAGATAACAAACCTCCAGCCACCAAACCCAAGCCTGTTGTGTTCCCAAAAAGCAGTTCGGCCGGGGGCAGTCCAGCGATGGGATCCCCA

Function

symbol description
srgap2 Predicted to enable GTPase activator activity; protein homodimerization activity; and small GTPase binding activity. Involved in glomerular visceral epithelial cell development. Predicted to be located in several cellular components, including dendritic spine head; phagocytic vesicle; and postsynaptic density. Predicted to be active in cytoplasm. Orthologous to human SRGAP2 (SLIT-ROBO Rho GTPase activating protein 2).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K07526 SRGAP; SLIT-ROBO Rho GTPase activating protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02911431_02958568.mRNA True 3192 mRNA 0.53 20 2911431 2958568

Neighbor

gene id symbol gene type direction distance location
CI01000058_02883775_02884290 NA coding upstream 25727 2882164 ~ 2885704 (+)
CI01000058_02650808_02653235 NA coding upstream 258060 2650436 ~ 2653371 (+)
CI01000058_02635467_02636768 NA coding upstream 274446 2635176 ~ 2636985 (+)
CI01000058_02629861_02631891 NA coding upstream 279137 2629690 ~ 2632294 (+)
CI01000058_02592534_02600835 NA coding upstream 309676 2591193 ~ 2601755 (+)
CI01000058_02964886_02978501 IKBKE coding downstream 6318 2964886 ~ 2978895 (+)
CI01000058_02979997_03027744 RASSF5 coding downstream 21429 2979997 ~ 3028144 (+)
CI01000058_03034418_03038200 DYRK3 coding downstream 75850 3034418 ~ 3038344 (+)
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding downstream 107511 3066079 ~ 3101574 (+)
CI01000058_03169524_03172961 FMODA coding downstream 210477 3169045 ~ 3173702 (+)
G248566 NA non-coding upstream 3234 2891351 ~ 2908197 (+)
G248574 NA non-coding upstream 32643 2867222 ~ 2878788 (+)
G248519 NA non-coding upstream 225797 2685275 ~ 2685634 (+)
G248516 NA non-coding upstream 237769 2673375 ~ 2673662 (+)
G248594 NA non-coding downstream 5925 2964493 ~ 2964823 (+)
G248613 NA non-coding downstream 149205 3107773 ~ 3108154 (+)
G248614 NA non-coding downstream 150441 3109009 ~ 3109249 (+)
G248568 NA non-coding downstream 153216 3111784 ~ 3114371 (+)
G248618 NA non-coding downstream 160500 3119068 ~ 3119298 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1113699 1794468 ~ 1800421 (+)
G247940 NA other upstream 1454984 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1623161 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2314260 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2455687 434913 ~ 455744 (+)
G250039 NA other downstream 1735840 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1867808 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013910 srgap2 coding CM030125.1 CM030125.1 46470371 ~ 46507717 (-)