CI01000058_02979997_03027744 (RASSF5)


Basic Information

Item Value
gene id CI01000058_02979997_03027744
gene name RASSF5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2979997 ~ 3028144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_02979997_03027744.mRNA
ATGGCGTCCGTCACTTTAGGACAGCACCCTGCTCAACACCACCTCGACCCGGATCAGCAACTTCTCCACAAACTGAAGTCGAGCGACAGAAAGAAATTCTCGCGTAAATGGTCGCTGGAGAAGATCATGCGAAACAGAGCGAGTGATATGGACAGCGCGAGAGCCGCAGTCTCAGCATCGCTCGTGTTATTCAATCACGAGCCGCCTTCAGCATCACACAACCGAGGCAGTAATGCCGGTTCGCCACGTAGTAGCATGAACGGATCTATTGTGGACATGAACCGAGAGAACGCTAACAATAATAACGGAATATTTCGCAGACACAGCGCCGGGAGCCGGAGAAGCTCCGTGAAGGACACAGCAAAGACCCACGCGTCTTCATCACCACAAGAAGTTCGCAATTCGTCAAACTTCAGCTGCCCGCCAGACGAACTGGAGGGACTGCAGATCGATAGGCTGACACAGGCAAAGTCAGGAGTAGTGAAGATGAGAAACGAGCCTCTGAGGATGGAGGCATGGTCCATCTTCACCCAGAGAGACCCGAGGGTGAAGGCGGAGACGGGAGAGGGCCACATCTTCACCTCCAGGAGTCTGAGCCAGGACTGGTGCGACGCCTGCAGCCGTCAGATCAGCAGCACTGCACTCAAGTGTCAAAGAGCGACTGGCGCAGGGAGCCCACACTACGACGCAACGGAGCCGCAGGCGCCCAGCCCCAGCCGGGACAGCGGCCGTTCACGGACCGGCACCTGGAGCGGGACGCAGTGGTGGCACTGGGGTCATGGCCGCAACAGGCCGCAGATAGCGGCGGTCATGCTGCCGGAGATGAGGACGGAGGAGGCGGTGGCCAGTGCCTGCTTTGGACAGGTCTCCAAGCGCCTGGGACGTTTTTTCCGCCGCCTGCCCAAGTCCCGCTCCTGGTCCGAGGGCCTCCGCATGCTGCGCCGCTCCAGCAGTAGTGGGACCCTCATGTTATCAGACTGCAGCTACACATGTCATTTGGAGTGTCAGGGGCTTGTTCAGCTGGACTGCAACCAACTAGACCAGCGGACAGAGGACACGTCTACTCCCACTTCACAGAGGCCCAGTGCCAAAGACCCTCAGGAGACGCTCTCATTGAACCTGTTTGATTTTAGCAACTTGATTTTGATTCCTGAAAACCAGAGATTCTGGGATGTGTATGTGTGGGCTGATTTCATAATTTGCGTAGAGAGCTGTATCCATGATCAATACTCGGGAGAGGGCTCCCTCTGGTGGTTGGCTGAATGGGAGTCAGCCTCAGTTGTTACAAAAGGGGGTTTGGATATCGAATGTGTTCAAGCCCCTCTGTCTCTGCTTGTGATCCAGCTCATTGATTATGATAATTTGACCCAAGGCCACTATTTCAGGAACTGGACATCAGATACCGGCCGCAACGTTCGCTGCACGTCAGTGTGCAAGTTTCGGCACTCGTTTCCGGTGACGTGTGGAGATCTGGCCCTTCACCTGAACTTGTGGTCCCCCGCTCCCAGCCCATCCTCCCCTTCCCACCCCTGGAGCCTGGAATGGTGCGTTTGGTCCCCCGAAGACCCGTGTAGGGAGTCCCCCAAACTGGATCCATCCCCGCAAATGACTGGCAGCAATAGCATGAGCAGTGGGTACTGCAGCCTGGATGAGGAGAGCGATGACTTCTCCTTCTTCACCGCCAAGACCTCCTTCTTCAGGCGGCCAAAGGCAAAGGAAGTAGCCAAGTCTCACACAATTGAACATTGTCTCTACACCACACAATACAGAACTGATAAAGAGAAATTTGAAGAAGTGGGTGTGATAAAAAGAAGAAAGAAACTCACTTTGCGTGTATTACAGGGGATGCAGCCAGTAGCTAAAAATACCTCTGACAGAATCTTTGTTGCTAAGGCTTGCTCAGCAACTGCACTGGATGTCACTCCCCCTAGAAAACCCCTCGATGAGGACCATTTCTGTCTGTCACTGGAAATGATGGAGCATTTAGCCAGTGTCACGAAAGAGGAAGAGGAAGACAAGCCAACATCCCTCACAGAAGAAGAAATTAAAGCAAAAATAGATGACTACAACTCCAAAGTTACAGAGAATGGAATGAAATTAAGCTCAGATGGCACATACACTGGTTTCATAAAGGTTCACTTGAAGTTGCGCAGGCCCGTGACTGTACTTTCTGTGGACGGGAAGTTACCAGGAACGTGTTCCTCTTCTGATAGTTCAGATAACCGTGCATCCTTCTACCTGCCCAGCGATGCCGTTAAGCAGCTACACATCAGCAGTACCACCACGGTCAGTGAGGTCATCCAGGGCCTGCTCAAGAAGTTCATGGTGCAGGATAACCCACGCAAGTTTGCCCTCTACAGCCAGACCCGTCGAGACAGCCAGGATCTTTTCCAGAAGTTGCCATTATCAGACTGCCCACTATACTTGAGGCTGTTAGCAGGGCCTGATCTAGAGAACTTGACGTTTGTACTCAAGGAAAACGAGACTGGTGAAGTGGAGTGGCATGCATTCTCAGTCCCGGAGCTGCAGAACTTCCTCATCATCCTGGAGAAGGAGGAGAAGGAGCGTATGCGGCAGGTGGAGCAGCGTTACGCTGCCTACAGGGAGAAGTTGCTACAGGCTCTATGCACTGATATATCATTTCTCATCTCCCTTAAAAGCACATTTAAGTCCCAATCTCTTAAAGAACCACGGGTTGTAATTTTTGACCAGTATGTTAGTAGTGATGGCACTTTAGAGTCGTTTCTATTTGGATCACTGTGCCCATGTGCTCGGCCTGTATATTTTGATCTTGTATGGGTACACGTCCTGGTGGACTGAAAGTCTCACTTCTACCCTTAAGCAAGCGGAAGGGCAGTGCCTTTAGTCTCTGTGTAGCTTATCTTGACTGTGTACTGTACATATGCTCTAGATGTCTGGCCCTATAACTCCACTTTGAGAGATTTCACACACATTTAGTCGCAGTAGCCAGGTGCTTTCAATGTCAGTCATTAAGTCCATGTGGGACTTTTTGGGACTAGCGTTTAAAATGTTGAGTGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGCATTTAATTTATTTTTTTGGCTCAGTTTCAGTGTGTGTAAACTTGAATATGTGGACAAATCAGTACTATCGGGCAATCTTTTTTGTTGTTTCAGAGTATTAAATGTTTAAAATGTCTATAAAACTGTAAATATACTCAAGAATTAA

Function

symbol description
rassf5 Predicted to act upstream of or within intracellular signal transduction and regulation of apoptotic process. Predicted to be located in cytoplasm and microtubule. Orthologous to human RASSF5 (Ras association domain family member 5).

GO: NA

KEGG:

id description
K08015 RASSF5, RAPL; Ras association domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_02979997_03027744.mRNA True 3220 mRNA 0.51 14 2979997 3028144

Neighbor

gene id symbol gene type direction distance location
CI01000058_02964886_02978501 IKBKE coding upstream 1102 2964886 ~ 2978895 (+)
CI01000058_02911431_02958568 SRGAP2 coding upstream 21429 2911431 ~ 2958568 (+)
CI01000058_02883775_02884290 NA coding upstream 94293 2882164 ~ 2885704 (+)
CI01000058_02650808_02653235 NA coding upstream 326626 2650436 ~ 2653371 (+)
CI01000058_02635467_02636768 NA coding upstream 343012 2635176 ~ 2636985 (+)
CI01000058_03034418_03038200 DYRK3 coding downstream 6274 3034418 ~ 3038344 (+)
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding downstream 37935 3066079 ~ 3101574 (+)
CI01000058_03169524_03172961 FMODA coding downstream 140901 3169045 ~ 3173702 (+)
CI01000058_03181624_03193630 SLC6A14 coding downstream 153276 3181420 ~ 3195924 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding downstream 172838 3200982 ~ 3220724 (+)
G248594 NA non-coding upstream 15174 2964493 ~ 2964823 (+)
G248566 NA non-coding upstream 71800 2891351 ~ 2908197 (+)
G248574 NA non-coding upstream 101209 2867222 ~ 2878788 (+)
G248519 NA non-coding upstream 294363 2685275 ~ 2685634 (+)
G248516 NA non-coding upstream 306335 2673375 ~ 2673662 (+)
G248613 NA non-coding downstream 79629 3107773 ~ 3108154 (+)
G248614 NA non-coding downstream 80865 3109009 ~ 3109249 (+)
G248568 NA non-coding downstream 83640 3111784 ~ 3114371 (+)
G248618 NA non-coding downstream 90924 3119068 ~ 3119298 (+)
G248560 NA non-coding downstream 108154 3136298 ~ 3141022 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1182265 1794468 ~ 1800421 (+)
G247940 NA other upstream 1523550 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1691727 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2382826 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2524253 434913 ~ 455744 (+)
G250039 NA other downstream 1666264 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1798232 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location