CI01000058_03034418_03038200 (DYRK3)


Basic Information

Item Value
gene id CI01000058_03034418_03038200
gene name DYRK3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3034418 ~ 3038344 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03034418_03038200.mRNA
CTCGCCACGGGGACGGTCTGTATGATTCCTACATGCGCACCGATCACATTGTGAACCAGGATGCTGATGTGAATGGACAGAGTCCCTCTGGACTGCCCCCTCTCCCCAAACACACTGGTGTCAACAAGCCTACAATGAAGGATCACCAAGCAATCCGAGGAGGACAGATGAAGGTGAAATATGTTTACGAGGACACCTACAACCGTAAACTCAATGGTATGAGCCAGCTCAATGGCACAACCCAAGTACCAGCTAAGTCCCAACCTGCAGTCTCCAAAGAGAGAAGCGTGGACAGCAACAGTTCTGTGAAATCCTCCGAGAGCTCAACAAAAGTCACAAAGCTGGGCAGCCCAATGTCCCCAGAACAAGCTATCAAGCAACACCGGCAGCAACTGACTACCTTGGAGCAACAGGAGATCCACAGCTATTCTGAAATCTACTTTCTGGGACCAAATGCCAAGAAGAGGCAGGCAGTGGCAGGGGGCACTAACAACTGTGGTTATGACGACGACCAGGGAGGATACATCCACGTACCTCATGATCACCTTGCCTATCGCTACGAGTTCCTCAAGGTGATCGGCAAAGGTAGTTTTGGACAAGTGGCGAAGGTTTACGACCACAAGTTACAACAGCACCTTGCCTTGAAGATGGTGCGTAACGAGAAGCGCTTCCATCGGCAAGCTGCTGAGGAGATCCGAATTCTGGAGCACCTGAAGAAGCAAGACAAGACAGGCAGCATGAACGTAGTTCACATGTTGGAGAATTTCACCTTCCGCAACCACATATGCATGACTTTTGAGCTGCTCAGCATGAACCTGTATGAGCTTATCAAACGCAACAAGTTCCAAGGTTTCAGTCTCCCGCTGGTACGCAAGTTTGCACACTCTATTCTCCAATGCCTGGAGGCTCTCCATCGCCATAAGATCATCCACTGTGACCTGAAACCAGAGAATATATTGCTGAAGCAGCAGGGCAGGAGTGGGATCAAGGTCATTGACTTTGGCTCCAGCTGTTTCGATCACCAGCGTGTCTACACGTACATCCAATCCCGCTTCTACCGTGCTCCTGAAGTCATCTTGGGATCACGATATGGTATGCCTATAGACATGTGGAGCTTTGGTTGCATTCTGGCAGAGCTGCTTACAGGATACCCTTTGTTTCCTGGTGAAGATGAAGGTGACCAGCTGGCCTGTATGATGGAACTACTGGGTATGCCACCTCAGAAACTGCTGGAACAAGCCAAGCGTGCCAAGAACTTCATCAACTCCAAAGGCCACCCACGCTACTGCACGGTCAGCACACTTAGCAACGGCACCGTAGTCCTCAATGGGAGCCGTTCTCGCCGAGGAAAATTGCGAGGACCCCCAGGAAGCAAGGAGTGGGGGACGGCTCTCAAAGGCTGTGAGGACCCCGCGTTCATTGACTTTCTGAAGAAGTGTTTGGATTGGGACCCTAGTACTCGAATTACACCAGTTCAGGCTTTAAGGCACCCCTGGCTCTACAAGAGACTGCCCAAGCCTGCACCTGGTGGTGAGAAATCCATGGTGCCCAAACGGATCACAGAGCACAGCACCTCTTTCCCTACTATAATCTCCAAGGTACCCCCAGTCATGGGCTCAACCAACAACAAACTGCGGACCACCATGATGGGTGACTCCACTGGAAGTATACCCTTTCGCACAGTGCTGCCGAAGCTTGTTTCATAGAGATTCCTTAGCTTTTCAGGGATAAAGACATATTTGTAGCAGTTTTAGAAGTGGATTTTTTTTTTTTTTTTTTTTTTCTGATTTGTTTTTTCTAAATGAGTGTCAAAGCTCACTGTTTCGATTTTTAATGAAGTGTAGCAAGCA

Function

symbol description
dyrk3 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within muscle cell development. Predicted to be active in cytoplasm; cytoskeleton; and nucleus. Is expressed in adaxial cell and somite. Orthologous to human DYRK3 (dual specificity tyrosine phosphorylation regulated kinase 3).

NR:

description
dual specificity tyrosine-phosphorylation-regulated kinase 3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K18669 DYRK2_3_4; dual specificity tyrosine-phosphorylation-regulated kinase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03034418_03038200.mRNA True 1850 mRNA 0.49 2 3034418 3038344

Neighbor

gene id symbol gene type direction distance location
CI01000058_02979997_03027744 RASSF5 coding upstream 6274 2979997 ~ 3028144 (+)
CI01000058_02964886_02978501 IKBKE coding upstream 55523 2964886 ~ 2978895 (+)
CI01000058_02911431_02958568 SRGAP2 coding upstream 75850 2911431 ~ 2958568 (+)
CI01000058_02883775_02884290 NA coding upstream 148714 2882164 ~ 2885704 (+)
CI01000058_02650808_02653235 NA coding upstream 381047 2650436 ~ 2653371 (+)
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding downstream 27735 3066079 ~ 3101574 (+)
CI01000058_03169524_03172961 FMODA coding downstream 130701 3169045 ~ 3173702 (+)
CI01000058_03181624_03193630 SLC6A14 coding downstream 143076 3181420 ~ 3195924 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding downstream 162638 3200982 ~ 3220724 (+)
CI01000058_03503653_03506062 NA coding downstream 465034 3503378 ~ 3506296 (+)
G248594 NA non-coding upstream 69595 2964493 ~ 2964823 (+)
G248566 NA non-coding upstream 126221 2891351 ~ 2908197 (+)
G248574 NA non-coding upstream 155630 2867222 ~ 2878788 (+)
G248519 NA non-coding upstream 348784 2685275 ~ 2685634 (+)
G248516 NA non-coding upstream 360756 2673375 ~ 2673662 (+)
G248613 NA non-coding downstream 69429 3107773 ~ 3108154 (+)
G248614 NA non-coding downstream 70665 3109009 ~ 3109249 (+)
G248568 NA non-coding downstream 73440 3111784 ~ 3114371 (+)
G248618 NA non-coding downstream 80724 3119068 ~ 3119298 (+)
G248560 NA non-coding downstream 97954 3136298 ~ 3141022 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1236686 1794468 ~ 1800421 (+)
G247940 NA other upstream 1577971 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1746148 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2437247 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2578674 434913 ~ 455744 (+)
G250039 NA other downstream 1656064 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1788032 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004110 dyrk3 coding NC_007122.7 CM002895.2 21259356 ~ 21267486 (-)