CI01000058_03201861_03220295 (TAF4A, TAF4)


Basic Information

Item Value
gene id CI01000058_03201861_03220295
gene name TAF4A, TAF4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3200982 ~ 3220724 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03201861_03220295.mRNA
GTATTAAAAGAGTGGGAAAGAAACTTTTTACCGATACTTCAGGTTGTATTAGATTAGAAGTTTCCACATCTTGTCACAATAAGTTTGAGGTAAGCTCCCAGGCAGCCGGAAAATCACCCCGCTGACTCCGGGAAAAGAGGCAATTCAACTAGCTAATGTTGACATTCTGCGAGCTCTTGTACATATGAACATAATGAAAGCAGCTGCTCTTCAAGTGTGTTAGATGATTATTTCTCCCAAGAGCATTGTTACTAGTGGACTTGAGGTGACACGGGCACTTGTCAAATCCTTATTGACATTGTGACACGAGACTCCCCTTCACTCACGCTTGTTCCTTCGAAAAGCAACTGGAGGGAAAAGCGGATGAAAACCCAAACTTCCTGAACTGATGTGCCAGAGGCACAGATGGAAGACAGCTAAGGGGATCCAGTGTTTCTTAATGCTATGGTAACTACTTTGATCGGGACGTCCACAGTGCAAACTTTGAACGGAGGCAATGCAATGGATTCGCACACTGAAAGCGGCACTTCAGTGTCCAGTGGTCCATCATCATCATCGGACGAGGCTTCAACTTCTGTACCAGTTGTTAATAACGGGCCCGGGGTGGCGAAAGGACACGGAAACGTCACTGTCACCCCAAACCCAAATACAGTGATACAGTCTTCTTACGGGAATCCTCCAGCATCCGCAGCATCCAGTGCAGGACCCTCAGTGACAGTTGTCAGGCCATCTATGCAAACTGCTGGAACAGGTTTAACTATTAACGGGAGTAATAATAATACCACCGTTTCGGCGACTGTAGCCAATGTAGCGACCCCGGGAATAACTACTACTTCTACTACTACTACAACTTGTACTACTACAACGACACCTCTTTTAATGAACCAGACTCCTGCCTCTGTCTCCGCGAGCAAGTCCGAGTCCCCTAAAACTATCATACAGTCCGCCGGCGGCATGACTCTCGGTCCTGGAGTGGCCAAGGGGGCTGTTTTGCAGGGGGTTGCGAGAACAGCAGCTCCGGCAACTGTTGCAGCAGCATCCAGCCCTGCCATCAGGGCCATTGCGCCACAGGTGTTAGCGCCCCGACTCCCTCAGAGCAACCCTGGCCAGAACATCCAGAACATTCAACTACCTCCAGGTATGGTGTTGGTGCGTAGTGACAGTGGTCAGTTGCTGATGATCCCTCAGCAGATGTTGGCACAGATGCAGGCCCAGTCTCAGGCCGCCCGCCCTGCTGCCCCCACCAGCACCACCCCTGGGCAGATCACCTCTGCACAGGCACCTGGAACTCCTCTAATGGCCCGACAGGTGACCCCTACCACCATCATAAAGCAGGGCTCTCCTACACCCAGCAGCACGGCCACTACCACACTCCAGAGACCACCTGTACAGGCTTCCTCTGTGGGTGCAGTGTTGTCAGTGCAGGCAGGAACTGCCCAGAGGACTGTGACTGCTGCCACGGGGACCACCGTCTCCTCGGCAACGGAGACAATGGAGAATGTAAAGAAATGTAGGAACTTCTTGTCCACGCTGATAAAGCTGGCCACTAGCGGTAAGCAGTCATCAGAGACTGTCGCCAACGTTAAAGAGCTGGTCAAGAACCTGCTGGAAGGGGCGATTGAAGCAGAGGAGTTCACCAGCAGGCTCTACAAAGAGCTCAACTCGTCTCCTCAGCCTTATCTAGTGCCTTTCCTGAAGAGGAGTCTTCCAGCTCTGCGACAGCTCACTCCTGACTCCACGGCCTTCATCCAGCAGAGCCAGGCCCTCCAGGCACCTACTGTGGTGCTGACCAGCCCCAACACTGCTGGAGCCACCGGCACAGCCCCTCGCACGCTCGTCCAGCCTGCCCTTAGCAACTCCAGCCAGACCGCCTCTCTGGTGTTGCAGCCTCCACAGCAGGGGGCAATAGTGAAGCCCCCTCAGGTTACCCTGACAACCACTCCTATGGTAACGCTCAGGGGTCAGCCCCACAGCCACATAGTGGTGGGTCAGCCTCAGGTGCAGCTCAAACAGATCCAGACAGTGGCAGTAAAGCAGGGTGTGGTGAGTAGCACTAAACTGGCTCCCGGCTCCGTGTCTGTAGCGATAGCTCAGAAGAATAAAGCTAAGGATGGTGCTGGAGGAACTTTCAGGGATGATGACGACATTAATGACGTGGCCTCAATGGCAGGTGTTAATCTTTCGGAGGAGAGTGCCCGTATCCTGGCCACCAACTCTGAGCTGGTTGGCGCGGTCACACGGTCTTGTAAAGATGAAGCTTTCCTCTCCGCCAGTATGCTACAGCACAAGATACTAGAGATAGGCCAAAGGTTTGGAGTGACGGAGCTGGGTCCCGAGGTTGTGAACATCGTCTCTCACGCCACTCAACAGAGACTGCAAAACCTTCTAGAGAAGGAGGACAGTCGGTACGAGCAGGTGGAGGATGTTCGCTCTCAGTTGAAGTTCTTTGAGCAACTTGACCAGTTGGAGAAACAAAAGAAAGAGGAACAGGAGAGAGAAATTTTAATGAAGGCAGCTAAGTCACGCTCACGACAAGAGGACCCCGAGCAGCTGCGGCTGAAACAGAAGGCCAAAGAGATGCAGCAGCAGGAATTGGCTCAGATTCGACAGAGAGACGCCAACTTGACGGCGTTGGCGGCTATCGGACCCAGAAAGAAAAGAAAACTGGATTCGCCTTCATTTGGGACTGACGCAGAGGGCTCAGGTTTGTGCACAAGTGCATCCGGGGGCTTAAATGCAGGAGCGTCGAGGCAGTTCACTCGCCAGCGCATCACGCGTGTAAACCTCAGGGATCTGCTCTTCTGTCTAGAGAACGAGAGAAGCACCAGCCACTCACAACTGCTCTACCGAGCCCTTCTCAAATAGCAGATAGCCCATGCCCTTCGCTCATTTCAGTCTTTAGGGCTCACTCCCTCATTCTTTCTGTCTTTTTTACTATTATCATTCTCTTTGTCATTCCCTTTTCGTCTTTCTTTATCGCTTTCTCACTTTCTGTCACTGTCTCACATACTCACACATACAGTGATACATTTTCCTTTCCTTTCTCGAGCTGACTTGTGCTCTTCTCTGTTTCACTCTGTTTTCTTTTAAGTCTTTTATTTTGCCTTGTTTTTAGCTTCCTGCCCTTATGAATTTTACTCTTTAAATTGTGTTAAAAGAAAATTGCAATTATATATCATATGTTTTTCATAGAAGGTGGCTTTGTAATGTGCAAATTACCTATGTAAAAAAAGAATTCACAGTGGAACTACCCATTCATTTTATATTTGTGTTTTTATAAAGATGTTTTAAGAA

Function

symbol description
taf4a Predicted to enable DNA binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF4 (TATA-box binding protein associated factor 4).
taf4 Enables aryl hydrocarbon receptor binding activity. Contributes to RNA polymerase II general transcription initiation factor activity and core promoter sequence-specific DNA binding activity. Involved in transcription initiation from RNA polymerase II promoter. Located in chromatin; cytosol; and nucleoplasm. Part of MLL1 complex; transcription factor TFIID complex; and transcription factor TFTC complex.

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K03129 TAF4; transcription initiation factor TFIID subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03201861_03220295.mRNA True 3294 mRNA 0.50 15 3200982 3220724

Neighbor

gene id symbol gene type direction distance location
CI01000058_03181624_03193630 SLC6A14 coding upstream 5058 3181420 ~ 3195924 (+)
CI01000058_03169524_03172961 FMODA coding upstream 27280 3169045 ~ 3173702 (+)
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 99408 3066079 ~ 3101574 (+)
CI01000058_03034418_03038200 DYRK3 coding upstream 162638 3034418 ~ 3038344 (+)
CI01000058_02979997_03027744 RASSF5 coding upstream 172838 2979997 ~ 3028144 (+)
CI01000058_03503653_03506062 NA coding downstream 282654 3503378 ~ 3506296 (+)
CI01000058_03644271_03645229 NA coding downstream 423547 3644271 ~ 3645229 (+)
CI01000058_03645458_03659734 NA coding downstream 424734 3645458 ~ 3659762 (+)
CI01000058_03846867_03850723 SYNPR, NAMPTB coding downstream 626143 3846867 ~ 3850723 (+)
CI01000058_03889526_03896649 SYNPR coding downstream 668590 3889314 ~ 3896755 (+)
G248625 NA non-coding upstream 36868 3163775 ~ 3164114 (+)
G248624 NA non-coding upstream 37540 3163089 ~ 3163442 (+)
G248623 NA non-coding upstream 38121 3162613 ~ 3162861 (+)
G248622 NA non-coding upstream 49151 3151250 ~ 3151831 (+)
G248575 NA non-coding upstream 50599 3149945 ~ 3150383 (+)
G248634 NA non-coding downstream 6003 3226727 ~ 3226953 (+)
G248636 NA non-coding downstream 6737 3227461 ~ 3227736 (+)
G248638 NA non-coding downstream 8395 3229119 ~ 3229342 (+)
G248572 NA non-coding downstream 17331 3238055 ~ 3250640 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1403250 1794468 ~ 1800421 (+)
G247940 NA other upstream 1744535 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 1912712 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 2603811 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 2745238 434913 ~ 455744 (+)
G250039 NA other downstream 1473684 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1605652 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008164 NA coding CM030123.1 CM030123.1 44721739 ~ 44740915 (-)