CI01000058_03644271_03645229


Basic Information

Item Value
gene id CI01000058_03644271_03645229
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3644271 ~ 3645229 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03644271_03645229.mRNA
ATGTTCACATTGATACATTTCACAAGCAGTGGAAGGGTCAATATGACTGGCTGGAAGACTGTCACTCCTACATTCAATGGTTGTTTCCAATACAAGAGCCAGGGGTGAATTGGAGTGCACATGTGCTCACAGAAAAGGAAATAAAGCTGTTCCGTAAAGATGAAGAAGCAAAGAAGAAATTGGTGGAATCATATAAGCTCATGCTAGATTTCTATGGTATATGCTTGGTCAATGAAAAAACAGGAGAAGTGAAACGTACCAATGACTGGGAGGAACGCTTTAGCAACTTGAACAGATATTCACACAACAACCTGCGCATCACACGCATCCTGAAGTGTTTGGGGACTCTTGGATTGAAGCACTACCAGGCCCCACTGGTCAAGTTCTTCCTCCATGAAACTCTTGTGGAGAAACAACTTCAGCGTGTAAAACAAAGCGTATTAGATTACTTTATGTTTACTGTATTGGATAAATTAGAGAGACAAAAGCTAGTTAGATTTGCCTTTAAGCATTTCAAACCCCGAGAACAGTTTGTCTGGGGCCCCAAGAAGATACTGTCAGGGGAG

Function

NR:

description
Si:busm1-6a2.1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03644271_03645229.mRNA True 566 mRNA 0.42 4 3644271 3645229

Neighbor

gene id symbol gene type direction distance location
CI01000058_03503653_03506062 NA coding upstream 137975 3503378 ~ 3506296 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding upstream 423547 3200982 ~ 3220724 (+)
CI01000058_03181624_03193630 SLC6A14 coding upstream 448347 3181420 ~ 3195924 (+)
CI01000058_03169524_03172961 FMODA coding upstream 470569 3169045 ~ 3173702 (+)
CI01000058_03066079_03101574 MAPKAPK2.S, MAPKAPK2, MAPKAPK2A coding upstream 542697 3066079 ~ 3101574 (+)
CI01000058_03645458_03659734 NA coding downstream 229 3645458 ~ 3659762 (+)
CI01000058_03846867_03850723 SYNPR, NAMPTB coding downstream 201638 3846867 ~ 3850723 (+)
CI01000058_03889526_03896649 SYNPR coding downstream 244085 3889314 ~ 3896755 (+)
CI01000058_03915537_03946197 ATXN7 coding downstream 269693 3914922 ~ 3948073 (+)
CI01000058_03959155_03965275 SLC2A9L1 coding downstream 313926 3959155 ~ 3965598 (+)
G249649 NA non-coding upstream 7209 3636812 ~ 3637062 (+)
G249647 NA non-coding upstream 15315 3628653 ~ 3628956 (+)
G249644 NA non-coding upstream 26329 3617711 ~ 3617942 (+)
G249642 NA non-coding upstream 42330 3601713 ~ 3601941 (+)
G249635 NA non-coding upstream 59315 3584635 ~ 3584956 (+)
G249653 NA non-coding downstream 11848 3657077 ~ 3657276 (+)
G249660 NA non-coding downstream 34378 3679607 ~ 3679867 (+)
G249662 NA non-coding downstream 38247 3683476 ~ 3701072 (+)
G249664 NA non-coding downstream 61603 3706832 ~ 3710079 (+)
G249669 NA non-coding downstream 76048 3721277 ~ 3732184 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1846539 1794468 ~ 1800421 (+)
G247940 NA other upstream 2187824 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 2356001 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3047100 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3188527 434913 ~ 455744 (+)
G250039 NA other downstream 1049179 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1181147 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location