CI01000058_03645458_03659734


Basic Information

Item Value
gene id CI01000058_03645458_03659734
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3645458 ~ 3659762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03645458_03659734.mRNA
ATGTCAGGGGAGGAACATAATGAAAGTGAAAACTTTGACCATCTTACAGAGAATACAACTACAGAAGGTGGGCAGCAAAAGGAAACCCTTGAGAGAACACAAGAATTGAACCAAACAGATGAACATAATCCTGTCATAATTAAGCTAAATGAAAAAGAGGCACAGGATAATCAGCCAATCAAAAATGAACAGGATCCAACTGAGAACAGTTCAAACACTAAAAAAGTAGAAAAGCAAGATCAAGAGAAGAGTAATGAAAGTAATGAAGAGCATTTCAAGCCCCAAGAAAACTTTGTCTTGGGCCCCAAGATTCCCTCAGGTTCTGAAGTGGTACGTGGAGAAAATGAAAACTTAAGCCAGGTTACAGAAGATAAATGCAGTGAAACAGCAGAAGTTGAGCAGGAAATGGTAAAGCTCCATGAAAGCACTGATGAAATGAGCAAAATAGATGCCAATCATTCTCCTGAAGGGATGGAAAATGAGACACCTAAAGATAACCTGAATATAGATAAGCCAGATAGTCCAAACAAATTGACAGGAACCAATTCTGATGGTGATCAGGGTGCAAATGAGGACGGTCAGTGCAGCTCAGAAAACAAAAGTGTAAAGCAAAATCAAGATATGAGTGATGGTGATAATGATGTTGGCATGACAACAGAAAACATGTCACATGATGATGGTGTCGGTGACATGACACCAGAAGACATGTCTCGTGATGATGATGATTGTGTTGACATGACAACAAAAAACATGTCTCTTGATGATGATGTTTCTGTCAGATCTGCAGAAAGAGTCGCAGGAACAGGTGTGCTGCAAAGGACATGCAAGAATTTCGGCACAGTGTTCGGGTTGTTTCCAATACAAGAGCCAGGGATGAATTGGAGAGCACATGTGCTCACAAAAAAGGAAATAAAGCTTTTTCGTAAAGATGAAGAAGCAAAGAGGAAATTGGTGGAGTCATATAAGCTCATGCTGGATTTTTACGGTATACGTTTGGTCAATGAATCATCAGGAGAGGTGAAACGTGCTAATAACTGGGAGGAACGCTTTAAGGACTTGAACAGATATTCACACAACAACCTGCGCATCACACGCATCCTGAAGTGTTTGGGGACTCTTGGATTGCAGCACTACCAGGCCCCACTGGTCAAGTTCTTCCTCCAGGAAACTCTTGTGAATGGACAACTTCAGCATGTGAAACAAAGCGTATTAGATTACTTTATGTTTGCTGTGTTGGACAAGTCAGAGAGACGAAAGCTGGCCACTCCCAATACACTTGACATGGAGTCCGACGATGAGTGCGAGTTTGACTCCACATGGGAGGATGAATACGAAACTAAAGCCCCCAGAAAGAAGATGTTGCACAGAAGGAGTTGCAGGAACATAAATGCTGCAAAGGACATGCAAGACTTTAAGCATAGTTGCAGAGATCTTGATGATAATGATGATGAACCAGGTGAATCATCATTTTCATCATTCATTTCTTGTTATGAAACTGTACGGCTCAATGAATATCATTTTTTCTCATGTAGACTGGGAAAAAGAGCATTACTGCTGCAGCAGATGGAAGCGCACTATGAACAGCAGAAGGCTAAGAAGAAACAGAAGTGTCTGATGTCTCAAGCAGCGAAGGAGAGGAATGCTCAGATCCTTAAGGTTGTCTGTATTATAGTCTACATATGCTCTACTATATATTTATATGATAATGTAGTATTCCAAACAAGCTGCCTCACTGACTTAAAGCTCTATTATAGTACAGTCAAAAATTTATTTTCATTTAATTACTACATACTGATGGATCTACAGAATGCTGAAAAAAAACTACAAACCAGACCGCTTCTTCATCCGGATATTATCAACCTTGAGGTATTTGACTAGCTTACATCCTTACTTTATGACTTATTAA

Function

NR:

description
Si:busm1-6a2.1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03645458_03659734.mRNA True 1906 mRNA 0.40 10 3645458 3659762

Neighbor

gene id symbol gene type direction distance location
CI01000058_03644271_03645229 NA coding upstream 229 3644271 ~ 3645229 (+)
CI01000058_03503653_03506062 NA coding upstream 139162 3503378 ~ 3506296 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding upstream 424734 3200982 ~ 3220724 (+)
CI01000058_03181624_03193630 SLC6A14 coding upstream 449534 3181420 ~ 3195924 (+)
CI01000058_03169524_03172961 FMODA coding upstream 471756 3169045 ~ 3173702 (+)
CI01000058_03846867_03850723 SYNPR, NAMPTB coding downstream 187105 3846867 ~ 3850723 (+)
CI01000058_03889526_03896649 SYNPR coding downstream 229552 3889314 ~ 3896755 (+)
CI01000058_03915537_03946197 ATXN7 coding downstream 255160 3914922 ~ 3948073 (+)
CI01000058_03959155_03965275 SLC2A9L1 coding downstream 299393 3959155 ~ 3965598 (+)
CI01000058_04174884_04175951 RHOL coding downstream 515038 4174800 ~ 4176830 (+)
G249649 NA non-coding upstream 8396 3636812 ~ 3637062 (+)
G249647 NA non-coding upstream 16502 3628653 ~ 3628956 (+)
G249644 NA non-coding upstream 27516 3617711 ~ 3617942 (+)
G249642 NA non-coding upstream 43517 3601713 ~ 3601941 (+)
G249635 NA non-coding upstream 60502 3584635 ~ 3584956 (+)
G249660 NA non-coding downstream 19845 3679607 ~ 3679867 (+)
G249662 NA non-coding downstream 23714 3683476 ~ 3701072 (+)
G249664 NA non-coding downstream 47070 3706832 ~ 3710079 (+)
G249669 NA non-coding downstream 61515 3721277 ~ 3732184 (+)
G249674 NA non-coding downstream 82898 3742660 ~ 3743084 (+)
CI01000058_01794468_01800421 KISS1 other upstream 1847726 1794468 ~ 1800421 (+)
G247940 NA other upstream 2189011 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 2357188 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3048287 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3189714 434913 ~ 455744 (+)
G250039 NA other downstream 1034646 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 1166614 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003406 CABZ01008730.1 coding NC_007122.7 CM002895.2 20896122 ~ 20906178 (+)