CI01000058_03889526_03896649 (SYNPR)


Basic Information

Item Value
gene id CI01000058_03889526_03896649
gene name SYNPR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3889314 ~ 3896755 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_03889526_03896649.mRNA
GTATATATTCTCATCATTGATTTTTTTTTTTTCAAGCTGCATATCTGCAGAATGACTTGTATCTGGGTTCAGTGAGATGTATCACCTCCTACAGAGAACCCATTCTCATATCAGTGTTGCAGAAATGTGTTTTAGGCAAGTCAGTTTAGCTCTCAGAGAGCTTGTCCTCTGTGCTTAATAAGACTAGGCTTCACAATAGATCCACAGCCTAAATGAAAAAGGGTAATGGACATATAAAGAGAAAACTCATGGGAAAGATTGGGAAAGAGATGGATGTTATAGAGCTTTTTGCCATCTTTGCATTTGCAACATGTGGAGGTTACTCTGGGCAACTGCGGGTTAGTGTGGACTGCATCAACAAGTCCGACAGCAACCTCAGTATTGGCATCAACTTTGCTTACCCATTCAGGTTGAACCGGGTGGAATTTGACGTGCCGATGTGTGAGGGAAGGAGGCAAGAGCGACTATACCTGATCGGAGATTTTTCTTCCTCTGCAGAGTTCTTCGTCACCATTGCTGTCTTTTCCTTTCTGTACTCCCTGCTGGCCACAGTGGTCTACATCTTTTTCCAGAACAAGTATCGCGAAAACAACCGCGGACCTCTCATTGACTTCATAGTGACGGTGGTGTTCTCATTTATGTGGCTAGTGAGTTCATCTGCCTGGGCAAAAGGTCTTTCAGATGTGAAGGCGGCAACCGATCCAGATGAGGTGGTTCTGCTCATGTCTGCATGTAAAGTGCAGACCAACAAGTGCGGCTCAGTGTACGGACCCAGATGGTCTGGCCTGAACACATCTGTGGTATTCGGCTATTTGAACTTCGTGCTGTGGGCTGGAAACATCTGGTTTGTGTTTAAAGAGACTGGATGGCACAAGGGAGGCGCAGCAAGATACCCTGCCTCATCCTCAGAAAAACAAGCTACGGCCTTCAACCAGCAGGTCTACAACCAGGGAAGCTTTGATCAATCAGGAGGTGCTTTTACTGGAACGGGGGACTTCGCCCAATCAGAGTACAGCCAGGTGGGAAATTATGCTTCGAGTGGGCCCATCTCCTACACCAATCAGTAACCCCATCTGCCTCTTTGCAATCCCCTAATACAGGGGACCAATTTCTAAGGGCAAAGTTCAATAATGTGCACCACAGAGGAAGGAAGAGATTATTATAACAGATATA

Function

symbol description
synpr Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_03889526_03896649.mRNA True 1173 mRNA 0.46 5 3889314 3896755

Neighbor

gene id symbol gene type direction distance location
CI01000058_03846867_03850723 SYNPR, NAMPTB coding upstream 38591 3846867 ~ 3850723 (+)
CI01000058_03645458_03659734 NA coding upstream 229552 3645458 ~ 3659762 (+)
CI01000058_03644271_03645229 NA coding upstream 244085 3644271 ~ 3645229 (+)
CI01000058_03503653_03506062 NA coding upstream 383018 3503378 ~ 3506296 (+)
CI01000058_03201861_03220295 TAF4A, TAF4 coding upstream 668590 3200982 ~ 3220724 (+)
CI01000058_03915537_03946197 ATXN7 coding downstream 18167 3914922 ~ 3948073 (+)
CI01000058_03959155_03965275 SLC2A9L1 coding downstream 62400 3959155 ~ 3965598 (+)
CI01000058_04174884_04175951 RHOL coding downstream 278045 4174800 ~ 4176830 (+)
CI01000058_04263520_04265153 NA coding downstream 366369 4263124 ~ 4265628 (+)
CI01000058_04272001_04275349 NA coding downstream 375151 4271906 ~ 4275431 (+)
G249692 NA non-coding upstream 114003 3774623 ~ 3775311 (+)
G249675 NA non-coding upstream 137234 3744045 ~ 3752080 (+)
G249674 NA non-coding upstream 146230 3742660 ~ 3743084 (+)
G249669 NA non-coding upstream 157130 3721277 ~ 3732184 (+)
G249664 NA non-coding upstream 179235 3706832 ~ 3710079 (+)
G249767 NA non-coding downstream 106908 4003663 ~ 4003971 (+)
G249769 NA non-coding downstream 109303 4006058 ~ 4006271 (+)
G249770 NA non-coding downstream 110560 4007315 ~ 4007534 (+)
G249771 NA non-coding downstream 114199 4010954 ~ 4011153 (+)
G249773 NA non-coding downstream 121742 4018497 ~ 4018753 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2091582 1794468 ~ 1800421 (+)
G247940 NA other upstream 2432867 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 2601044 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3292143 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3433570 434913 ~ 455744 (+)
G250039 NA other downstream 797653 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 929621 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location