XLOC_010121 (cep162)


Basic Information

Item Value
gene id XLOC_010121
gene name cep162
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 37891735 ~ 37944480 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020084
CTTCCATCAAATATACGGAGCCATGTGATCTAATACGACCAATAAGCTTTCAGTAATCCCCCGGTTATAACAGCGGGAAACTAACTAATAATAATGTGAATATGAAATAATTTATTGCATATAACGTTACATTTACCAGCAGTTTCTGTATTGGTGAGTTAATAGTGTATTGGTTGACTTTCATTTTGACTAGTAGGTTGAACGTTACTTTCTGTTGCCATGACGAGTTAGCGAGCTAATAACGAAACCCACTCACAGATCAACAACAAAAGCATCATCCCGTGTACTTtccttttctttaataaatagaTCATCAGTCTGTTTAAAATGCAGCACGTGCAGACGTATTTCTGTCTCTCCCACACGATTTTTCAATTAGGATTGAATTATTTGTTAGTCTTTCTTCAGATAAGCAGTCTTTTCTTAACGTTAACCTATATAATATAACGCTACAGTATTGGTATTATTCTTGTATGTTTGTCCCACAGTGTCAGTGAATTATGGCTCATAGACTGACCAAAGAGGAGCTGGATCAACAGTTTGAGCAGTTCTTGAAAGAGTCAGTCTCTGATGACTCTGTTGATCTGGGCACCAGCTCCAAACGTCCTAGTGTCCTTGACAGCTTGGGAAAAGCACCTGTCAGGCCAGTGAAGAAGGCCTCAGCGTCTGTGCCGTGGTGgcaagatgatgatgataatgatgatgacagTGAAGAGAAAGGGATGTCATCGACTGGAAGGTCCTTCCTGAAGTCTCTGAGGAAGACTCCATCCATCAAAGAAGTAGATGAAGAGCAGCCAAAGGAGCTTTTCTTGGAGGATGAAGGGAACAGAGACCATGTAATCCTTAGCAGAGACAGTCTTGAGCCTGAAGATTCGTTGGTGATACCTAGTGCCGGGGCTCGAGGGCTGGATACGttggatgaggatgatgatgatgccaGATTTCTATCTAATCTGAAGAAAGTATCCTCATCCTCTATTGACTTCTCCAGAATAAATCGAGAACAGGAGCTGTCTGCCCCAACCAGCCCACTGAGAAGAGAAGAGATGGATTCGACAATTGAGGAGGAACAGAGAATGAATAAAGACACCGCTGCTTCTCCTGCATATAGTGAAGATTTTGAGGAAGAGGCGAGTGACAAAAGTGATGTGGAGCCTCAAGAGAAGAAACCTGAAAGACTTGGGATGCTGGCCAAAGTGTCATTACACGACTCTCTAAATTCCACGGATGGAGCATTGGCTCCGGCAGTTCCAAGTTTGGCCGTTGCGAGAGAAAATCGTCCAGAAAGCAAACAAACAGACATGCCAGCACTGGAACCCGCAGTGCAATCATATGGTCAGAGTGGAGGGAGTGAGATGGAGGCACTGCAGGAGGCGTACAGGCAGATCAGCGGCTCAGCAGGAGTGTGTGAAGATGGACAAGTCGAGGCTGGCAGgactcctctttctctctctacaCTCCAGCCTGCGTCCACCGTGGAGTCAGATTTACCCACTGCTGAGGAACTTATGCAGCCCATAGGACCAGACAGCGGATTCACCCGTGGCTTCTCTCTCCAGCCCATAACTGAGGCTGTGCCCAGGAGCAGAGACAATCAAAGTCCATTAAGGATATCTTCAGACGAGAGCCCTTTCAGTTCAGCTAATGAAGGCTATGGAGGAGGTAATACAGCTAACCTTACAGGAGGAGAACATCCAGATTCCTATAAGTTCACTCAGAAGAGCATATCGGAGGAGATCAGAAGACTGATGCAAGAGCAGGACACCTCCTCTCAGGAACCTCCACCTTTAAAACCAAAGAAGCGCCAGGTTCCTGCCAGAAGCAATGCATCTACATCTGCTTCCTCTAGAAAAGCTCCGGTTCCATCGGTGAGGGTTAAAAAACCTGAGAGCAAGCCGTTACACAGAGTGCCAGCACCCAGCAGAGCTGCTCAAGCAGCCAAACCTCCATCTCCTCCAACACTGAGGAAAGCTCAGAACCAGACTTTTAAAAAAACCCAAAACctcaaccaaacacacacaatcaaagGTTTAGACACAAGTTTAAAGCTAAGCAGTGAACTGGTAGAATCTGTGCAGTCTTTTGCTGCATTCCTACAGCATCAGGTTGAAGCCAGCAGTCTTCAGGACAAAGGTCCTTTCCAAGCAAACAAGATTGCTTCTGAAGCAATGACAGCGCATAAGGGGATGCAAGAGAAGATGGATGGTGGTCCGGAGCTTGCATCGCTGGAGCGTCTCCGTCTGCAGCTCgccaagaaagagagagagctcaGTCTGAGGGAAGACCAGTTACAAGAGCAGCACAAGCAAGAGCTGACAGCCCTGAGACAGGAGAACTACATCTTACAGAGCAAGTTGCACCGTGCCGAAGAGGCCAGTAACAAACGGAAGTGGAGTTTTGGTGAAGCTTCAGACCCTGTGACTGAAGAGAAACTCAAGCTCATAGAAAAAGAGATGAAAGAACAAGAGACTCTGATTCAGGGTTACCATCAGGAGAACGAGAAGCTGTATCTGCAAATGAAAGCACTCCAAGCTCAAAGCAAACAGAACGAGGAGGCTTTGTTCATGGAGAACCAGAGACTTCTCACTGAGCTCTCCTTCGCTAGGGACCGGATGAACACAAACAACATTCAAAGAACCATCAGAGAGAGAAGCATTGTTGACCAAAGCTTCAACATTGCAGAGTTGACAAGTCAGGTACAAGCTGCACAGAAAAAGGAAGAACGGCTCCAAGAGGAGGTCCGCAGGCTGAAGCAGGAGAAACAAGCTCTGCATGTAGATCTGGAGATGATGAGGAAAGAGAGGGATCTTGCTAAAGTTCAGGCTGTGTGTAAATCAGGCGATAAAGGTTTCGAATTGAAACTGCTCCATGACAAACATCGAGAGGAGGTCACAGAGCTGAAGAAAAGACTGCAGTGGTACGCCAAGAACCAGGAACTACTGGACAAAGATGCAGCCAGACTCCACGCCGCCACCGCTGAGATTCAAAAGCTCACTGAGCAGGTAGAAAAGCTAAAAGCGGAGGTTAGCAGGAGGGCCAATGAGCAACAAAGAAAGGCAAAAGAAAAAGCAGGTGAAGCAAAAAGAATCCAAGACCTAGAGCGACAGCTCAAACAGAAGGAAGAACTCTTGAAACGCAGGCATCCAAATTCTCTGCCAGCCCTGATTTTGGCAGCTGCGTCTACCGGGGCTGAAGAAGATCGACTGGATGTCCGTTCTCTAGCTCAGTCCTCTCAGACAGCGGCTTTGTTAGAGAGACGTGTTCATCGCCTGGAGGCAGAGCTGGAGGGCCGAGATGAAGCAGCCAAACGCAGCCTCCGAGCAATGGAACAACAGTATCACAGAATCAAAcTCCAGTATGAACAGCAGATCTCAGATTTGGAGCAGCGTTTGTCTGAGAAGAGCCACAGCTATCCAGCCATCTCATCAGAGCTGATTAAATCCCACACTCAGACTTTAAAAGCAGAGCTGGAGGAAGTGAAGGAGGTCCATCAGAAGCAAGTGAGCGTCCTCCAGGCAGAAGTGGACTCTCTGCAAGAACAGCTCCGCCAGGCCCAGGCTTCAACACAAACAGAGAAGCCTGCCCGCAGCCCCTCACGCCACCAGCTCCACGCAGAGGCCGCACAAGCAGCCCGCATAGAGAGACTGACCCAAGAGCTGAACTCCAAGAGCCGCAGCATTCAGGAGCTGACCCGCACCATAGAACGTCTGCAGAGAGAAAGGAGGACCATGCTGTCAGGTCCTAGCCATGAAAGGCCCAACAATGAGCCCAAGCGACATTTGGGCACAGCCAAAGACACAAAAAAACCCTCAGTGGAAACTTTCCCTCCGACTCAAGATGAGAAGGACTATCATCCTGGAGCCTTCTCAGGAACACACATCTCTGAGGTGCAGCTGGAAAATGATAGTTTGAGGACTAAATTAGAGGAGCTGGAAGTACTGAGAGAAAAGGAGAAGGTTTCACTGCAGGCTGCGGTCACGCATGCACAGAATCAGCTTCTCAGAATTGAAGAGCAGAATGCTGAGCAGCTCACTTCAGTCAAGGCTGAGCATCGTAAAGAGATTGAGCATCTTCTGGCTCGTCATGCCCTTGAGCATTCCTCCTCCAGAGTGGCTGAACTCACCAGTCAACTCAACACACAAGAGATCATAGTACAACATTTACAAGGGCAAGTAAAAGAGCTCCAGGGAACCAAAGAAGCTCTGGCTGTGACGAAGCTCAGAGAGGAGACCCTGCAGAATCAGCTGTCTAAACTTCTAGAAGAGCTAAAAGAGGCCAAAGAAGCCCACAGTCCTGAACTAAAACACTTCACTAGCCTAGAGCAAAAAATTCAGTCCATGGAATTCAGATACAGTCAACGAGAGAAACAACTTCAGCAGGTAATTGCAGACACACGGCGGGTGGTGGAACAGGAGCAACAGAGTGAGGTGGAGCGCTGGAGGAAGCTCGCTCAAGGAAGAGCCAAAGAGCTGGAGGCCTTTAGAATGGAGCTGGACTCAATACTGGACGTCCTCCGAGAGCTTCAGCGACAGGGGGTAGTCATACCCATGCCAGAACACACATCCACTAACACGCACACATACCTGCCACTCCGATCCTGA
>TCONS_00020085
CCATGTGATCTAATACGACCAATAAGCTTTCAGTAATCCCCCGGTTATAACAGCGGGAAACTAACTAATAATAATGTGAATATGAAATAATTTATTGCATATAACGTTACATTTACCAGCAGTTTCTGTATTGTGTCAGTGAATTATGGCTCATAGACTGACCAAAGAGGAGCTGGATCAACAGTTTGAGCAGTTCTTGAAAGAGTCAGTCTCTGATGACTCTGTTGATCTGGGCACCAGCTCCAAACGTCCTAGTGTCCTTGACAGCTTGGGAAAAGCACCTGTCAGGCCAGTGAAGAAGGCCTCAGCGTCTGTGCCGTGGTGgcaagatgatgatgataatgatgatgacagTGAAGAGAAAGGGATGTCATCGACTGGAAGGTCCTTCCTGAAGTCTCTGAGGAAGACTCCATCCATCAAAGAAGTAGATGAAGAGCAGCCAAAGGAGCTTTTCTTGGAGGATGAAGGGAACAGAGACCATGTAATCCTTAGCAGAGACAGTCTTGAGCCTGAAGATTCGTTGGTGATACCTAGTGCCGGGGCTCGAGGGCTGGATACGttggatgaggatgatgatgatgccaGATTTCTATCTAATCTGAAGAAAGTATCCTCATCCTCTATTGACTTCTCCAGAATAAATCGAGAACAGGAGCTGTCTGCCCCAACCAGCCCACTGAGAAGAGAAGAGATGGATTCGACAATTGAGGAGGAACAGAGAATGAATAAAGACACCGCTGCTTCTCCTGCATATAGTGAAGATTTTGAGGAAGAGGCGAGTGACAAAAGTGATGTGGAGCCTCAAGAGAAGAAACCTGAAAGACTTGGGATGCTGGCCAAAGTGTCATTACACGACTCTCTAAATTCCACGGATGGAGCATTGGCTCCGGCAGTTCCAAGTTTGGCCGTTGCGAGAGAAAATCGTCCAGAAAGCAAACAAACAGACATGCCAGCACTGGAACCCGCAGTGCAATCATATGGTCAGAGTGGAGGGAGTGAGATGGAGGCACTGCAGGAGGCGTACAGGCAGATCAGCGGCTCAGCAGGAGTGTGTGAAGATGGACAAGTCGAGGCTGGCAGgactcctctttctctctctacaCTCCAGCCTGCGTCCACCGTGGAGTCAGATTTACCCACTGCTGAGGAACTTATGCAGCCCATAGGACCAGACAGCGGATTCACCCGTGGCTTCTCTCTCCAGCCCATAACTGAGGCTGTGCCCAGGAGCAGAGACAATCAAAGTCCATTAAGGATATCTTCAGACGAGAGCCCTTTCAGTTCAGCTAATGAAGGCTATGGAGGAGGTAATACAGCTAACCTTACAGGAGGAGAACATCCAGATTCCTATAAGTTCACTCAGAAGAGCATATCGGAGGAGATCAGAAGACTGATGCAAGAGCAGGACACCTCCTCTCAGGAACCTCCACCTTTAAAACCAAAGAAGCGCCAGGTTCCTGCCAGAAGCAATGCATCTACATCTGCTTCCTCTAGAAAAGCTCCGGTTCCATCGGTGAGGGTTAAAAAACCTGAGAGCAAGCCGTTACACAGAGTGCCAGCACCCAGCAGAGCTGCTCAAGCAGCCAAACCTCCATCTCCTCCAACACTGAGGAAAGCTCAGAACCAGACTTTTAAAAAAACCCAAAACctcaaccaaacacacacaatcaaagGTTTAGACACAAGTTTAAAGCTAAGCAGTGAACTGGTAGAATCTGTGCAGTCTTTTGCTGCATTCCTACAGCATCAGGTTGAAGCCAGCAGTCTTCAGGACAAAGGTCCTTTCCAAGCAAACAAGATTGCTTCTGAAGCAATGACAGCGCATAAGGGGATGCAAGAGAAGATGGATGGTGGTCCGGAGCTTGCATCGCTGGAGCGTCTCCGTCTGCAGCTCgccaagaaagagagagagctcaGTCTGAGGGAAGACCAGTTACAAGAGCAGCACAAGCAAGAGCTGACAGCCCTGAGACAGGAGAACTACATCTTACAGAGCAAGTTGCACCGTGCCGAAGAGGCCAGTAACAAACGGAAGTGGAGTTTTGGTGAAGCTTCAGACCCTGTGACTGAAGAGAAACTCAAGCTCATAGAAAAAGAGATGAAAGAACAAGAGACTCTGATTCAGGGTTACCATCAGGAGAACGAGAAGCTGTATCTGCAAATGAAAGCACTCCAAGCTCAAAGCAAACAGAACGAGGAGGCTTTGTTCATGGAGAACCAGAGACTTCTCACTGAGCTCTCCTTCGCTAGGGACCGGATGAACACAAACAACATTCAAAGAACCATCAGAGAGAGAAGCATTGTTGACCAAAGCTTCAACATTGCAGAGTTGACAAGTCAGGTACAAGCTGCACAGAAAAAGGAAGAACGGCTCCAAGAGGAGGTCCGCAGGCTGAAGCAGGAGAAACAAGCTCTGCATGTAGATCTGGAGATGATGAGGAAAGAGAGGGATCTTGCTAAAGTTCAGGCTGTGTGTAAATCAGGCGATAAAGGTTTCGAATTGAAACTGCTCCATGACAAACATCGAGAGGAGGTCACAGAGCTGAAGAAAAGACTGCAGTGGTACGCCAAGAACCAGGAACTACTGGACAAAGATGCAGCCAGACTCCACGCCGCCACCGCTGAGATTCAAAAGCTCACTGAGCAGGTAGAAAAGCTAAAAGCGGAGGTTAGCAGGAGGGCCAATGAGCAACAAAGAAAGGCAAAAGAAAAAGCAGGTGAAGCAAAAAGAATCCAAGACCTAGAGCGACAGCTCAAACAGAAGGAAGAACTCTTGAAACGCAGGCATCCAAATTCTCTGCCAGCCCTGATTTTGGCAGCTGCGTCTACCGGGGCTGAAGAAGATCGACTGGATGTCCGTTCTCTAGCTCAGTCCTCTCAGACAGCGGCTTTGTTAGAGAGACGTGTTCATCGCCTGGAGGCAGAGCTGGAGGGCCGAGATGAAGCAGCCAAACGCAGCCTCCGAGCAATGGAACAACAGTATCACAGAATCAAAcTCCAGTATGAACAGCAGATCTCAGATTTGGAGCAGCGTTTGTCTGAGAAGAGCCACAGCTATCCAGCCATCTCATCAGAGCTGATTAAATCCCACACTCAGACTTTAAAAGCAGAGCTGGAGGAAGTGAAGGAGGTCCATCAGAAGCAAGTGAGCGTCCTCCAGGCAGAAGTGGACTCTCTGCAAGAACAGCTCCGCCAGGCCCAGGCTTCAACACAAACAGAGAAGCCTGCCCGCAGCCCCTCACGCCACCAGCTCCACGCAGAGGCCGCACAAGCAGCCCGCATAGAGAGACTGACCCAAGAGCTGAACTCCAAGAGCCGCAGCATTCAGGAGCTGACCCGCACCATAGAACGTCTGCAGAGAGAAAGGAGGACCATGCTGTCAGGTCCTAGCCATGAAAGGCCCAACAATGAGCCCAAGCGACATTTGGGCACAGCCAAAGACACAAAAAAACCCTCAGTGGAAACTTTCCCTCCGACTCAAGATGAGAAGGACTATCATCCTGGAGCCTTCTCAGGAACACACATCTCTGAGGTGCAGCTGGAAAATGATAGTTTGAGGACTAAATTAGAGGAGCTGGAAGTACTGAGAGAAAAGGAGAAGGTTTCACTGCAGGCTGCGGTCACGCATGCACAGAATCAGCTTCTCAGAATTGAAGAGCAGAATGCTGAGCAGCTCACTTCAGTCAAGGCTGAGCATCGTAAAGAGATTGAGCATCTTCTGGCTCGTCATGCCCTTGAGCATTCCTCCTCCAGAGTGGCTGAACTCACCAGTCAACTCAACACACAAGAGATCATAGTACAACATTTACAAGGGCAAGTAAAAGAGCTCCAGGGAACCAAAGAAGCTCTGGCTGTGACGAAGCTCAGAGAGGAGACCCTGCAGAATCAGCTGTCTAAACTTCTAGAAGAGCTAAAAGAGGCCAAAGAAGCCCACAGTCCTGAACTAAAACACTTCACTAGCCTAGAGCAAAAAATTCAGTCCATGGAATTCAGATACAGTCAACGAGAGAAACAACTTCAGCAGGTAATTGCAGACACACGGCGGGTGGTGGAACAGGAGCAACAGAGTGAGGTGGAGCGCTGGAGGAAGCTCGCTCAAGGAAGAGCCAAAGAGCTGGAGGCCTTTAGAATGGAGCTGGACTCAATACTGGACGTCCTCCGAGAGCTTCAGCGACAGGGGGTAGTCATACCCATGCCAGAACACACATCCACTAACACGCACACATACCTGCCACTCCGATCCTGAAAAAAACTGGAATCATTGATGTGTGGAAGCAAGGGAAGGGGgtgtatttatattagttttttatatagATTATTTAATTATTGCTGAGAAACATGCAGGGTAAGCAACATCAAATACAAAGCTTTTGGTGTTAGTAACTAGGATTTTGTATTAAAGTTAATTAATG

Function

symbol description
cep162 Acts upstream of or within cilium assembly and heart looping. Predicted to be located in cytoplasm and microtubule. Predicted to be active in axonemal microtubule; centriole; and centrosome. Is expressed in head. Orthologous to human CEP162 (centrosomal protein 162).

GO:

id name namespace
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0001947 heart looping biological_process
GO:0005814 centriole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005879 axonemal microtubule cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-100922-266 Acts upstream of or within cilium assembly and heart looping. Predicted to be located in cytoplasm and microtubule. Predicted to be active in axonemal microtubule; centriole; and centrosome. Is expressed in head. Orthologous to human CEP162 (centrosomal protein 162).

Ensembl:

ensembl_id ENSDARG00000087369

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020084 False 4604 mRNA 0.48 25 37891735 37944314
TCONS_00020085 True 4415 mRNA 0.48 26 37891755 37944480

Neighbor

gene id symbol gene type direction distance location
XLOC_010120 si:ch211-198c19.1 coding upstream 12429 37876779 ~ 37879306 (+)
XLOC_010119 BX294107.1 coding upstream 120135 37771483 ~ 37771600 (+)
XLOC_010118 NA coding upstream 178098 37713264 ~ 37713637 (+)
XLOC_010117 NA coding upstream 231124 37659520 ~ 37660611 (+)
XLOC_010116 NA coding upstream 249872 37633447 ~ 37641863 (+)
XLOC_010122 CT025591.1 coding downstream 76539 38021019 ~ 38021134 (+)
XLOC_010123 pogzb coding downstream 174524 38119004 ~ 38136670 (+)
XLOC_010124 selenbp1 coding downstream 193766 38138246 ~ 38157299 (+)
XLOC_010125 pi4kb coding downstream 215278 38159758 ~ 38200523 (+)
XLOC_010126 myo1eb coding downstream 257360 38201840 ~ 38238909 (+)
XLOC_010114 NA non-coding upstream 932907 36955088 ~ 36958828 (+)
XLOC_010134 NA non-coding downstream 787307 38731787 ~ 38733942 (+)
XLOC_010142 NA non-coding downstream 1679644 39624124 ~ 39627370 (+)
XLOC_010143 NA non-coding downstream 1683233 39627713 ~ 39628196 (+)
XLOC_010144 NA non-coding downstream 1687130 39631610 ~ 39632068 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_02235073_02261683 CEP162 coding CI01000016 null 2235073 ~ 2262308 (+)