CI01000058_04344622_04358133


Basic Information

Item Value
gene id CI01000058_04344622_04358133
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4343021 ~ 4358133 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04344622_04358133.mRNA
CTATATAAATGGAAAATCAGAATAATGAGTCATTTTTGTTCAAAAATCAGACTCGGACGCAGAAGAATTGAAAATTAAACTGAGTGACAATGATCTGTTTGTGAATTATTCTAAAGAAATGGAAAATGAAAGTTTGAGGCCAACTTGGTTCATAACCTATTCAAACATTTTGCCTCTATGTTTGAACATACAACATCTTTTTGAGATAATTTATAATCAACATCTCTTGGGGCAAATGGAAAAGAACTAACATCAGACCAATATTTTAAAGATAGCCTAAATCACAGTTGTAAAACAAATGATCCAAGTCTAACTTGTGAACTGTACAAAAAGTGCATTGCTATCAATGTCCATGAATTTTGATAAGAATGCTTTACATGGGTATATTTTGTGAAGTAGGCTATTTTAAAGACTGGACAGAAAATCTGATGAGAAGCTGAAGTGATCAAAAATCCATATTGGCTGAAGTGATATACAAGTTTTGAATGCTTATATCTTCTAATTGCGAATTTTGTCATTGTTTTGGAGCACACTAGCTTAACAGTAAGGCTAACATTGCCTATTCAAAGTCAAATAACTTCAATTATGATTTCATGGGGACTTTAAATATATTTTTTTAAAGTACTAAATATAAAGAAATCAATAGCACTTTTGAAAAAAAAAAATTTAAATGATGTAGCTCACGTAAAAAAAAAAAAAAAAAGTGATATTTGGTTCAATGTTGACTCGATGACCGCTCGGACCGATTTAAGAATGATTCGTTGTAAAGATTCGACTCGAAAGAACGATTCACGTATAGCTTACTAATTATACTACAACACACTTTCTATCACATTGTATGAGTTTTATGAACATTCTACCTTAAAATTGAACTGAAGTATTTTCACTGATAATTATTTTATTGTATTATTTTATTTTATACTAATTACTAAAGTTTATTTTGTACAAAATATAGTTCCGCCATTTACATGTGATGTGCCGTTGGGTGTCGTCGCTTGCTTCACATACTTTCAGGCGCTGATGAGAGTGGGAACTTTGACAATCACTTCTCTTTTACAAGAAGATCTTTCTGTCGTCGATCAGATTTAATCGAATTGATGCCAGGGTGGTTTGACAGTAAATATACTTAGCTCACAACTTTAGACGGCTGTTTTTACATTTTAATTAGATGTTCATGATGTAGCGTCAGATAGTTTTGCTGTAGTAGGGGGCGAGGTTTGTTTCATCTCCAACACAAACATCTGAAAATGTTGATAAGACAACACGCACTACTGAGGAATCGCAACCAGATACCGTTTATTGGGCTCCAGGTAAGTTTAATGTTGTATAATTTTCCTAGAATTAAAAGCGAGCAACTTTAATCGTAGAGCTCTTTATCAAATGCAGTCTAGGTAGGCAGCTCACTAGGTTTTGAAACAGAACCGCTCTCACTATTTACACTTGATGAGTCGCTTCCTATGTTTGTACATTCAACTGCGAGCAGGCGTCTCCTTCTTAATGTAAGCGATGACATAACCCTTATGTCTGACTCTTTCGAGGAATGAAATATTCTGTGACTGACATCTACTCCCTGAGATTACCTGGCCTAATGAATTTGAAACATGGCAGGAATAGCATGGTATCAGAAAAAGATTGGAGCGTATGATCAGCAGATTTGGGAGAAATCACTGGAACAGAATGAGATCAAGGGCTTTGGAAGCAAACCTAAGAAGACTGGCCATATCAAGCCAGACCTCATTGATGTTGACCTATGGTGGATCCAAGTTACTTCCAAATGCATCTCCACCCTCATCTTGATTATGTATTTCCTTCAAGTGGCAGGAGCGGTGTTGTATTTTGAGGTACCAGCAGCCTGTGCCAGTGAAGTTGTGGGTCCATTGTGTCTCATGCTGTTGTTGGGTACAGTACACTGCCAAATAGTATCTACAGAATCCTCCAGAAGCCCGGACAACAGCCCTGTCCCAAGTCGGACAGCCAGCCCTGTTCGCAGGAAAAGACAGAGGAAGAGTAGAAAAGCAAAGAGGTCTGAGGATGAGGGCAGCAGAGGGGGAGGGATAGTAGAACTCAAACCCCATCAACTTGAAGACAACAACCGGTTCTACAGATCAGAGAAGAGACTGAATTCCCTGAGGAGGCCTCCGTATGGGGCTTCTGAAGATCTCTCCAGTGAGGAAGAGGAGGCAGATGAAGCAGAGCTGCAAAGAGAGAGACTCTTCTCATCAGCACCTCCAAAATATGCCCGAGCGCTCAGGAATAGACTTCACAAAGTCCCCAAGAACAATTCGCCACCACAGACTCAGGGAGACAGTAATGGGATGCCAACAGACACCCCAGCTCTTCCACGTGAAGTCGAGCTTCTGCGACCTTCAGAGGGCTCGCGTCCAGCCTCTGACACAGATGATATGTTATGGGAGGAGCTTCTACATGATCCTGACTCCGCCTCCACAGGAAGCAGTGACAGTGGGGAGGAGGAGCCTCACAGTCATAGCCACTCCCTCCCTCTGCCCAACATCACTCTGACTAGTGATGAGGATGAGGCTTTACCGCAACACCAGTTTTCATGGCTGCAAGCTTGTCATCCCTCCGAAGACCGCGTCAGTGCCATAATCTGGGAGCAAGGAGAGTGTAAGAAAGCTGACATGTCCGTGCTGGAGATCAGTGGTATCATTCTCACACGAGTGAAGGTGGTTGAGCAAGGGATGGGTTATCTGATCTTCGGCAGCTTGGTTACGGCCTCACTGGCTCTGCTGCCCTACTGCTTCAGACTGGCACAGAAACTGGATGTTGCCAATCTCAATTCTGTTTCCCTTGAGGAACTTCCAGCAGTGGCCATCGGGCCGCCTTGTGCCTTGTCTTATGCGTTCTTCATCATCACCACAGTGGAAAGAGTTTTCCTCTCTGGACTTTTTTTCTTTATGATGTGTGTGGCTGAGAGGACATATAAACAGCGCCTTTTATTTGCGAAACTTTTCAGCCATCTCACATCTGCACGCAAAGCCAAAAAATCTGAGATTCCTCATTTTCGGCTAAAGAAAGTACAGAATATCAAGATGTGGCTTTCACTTCGATCATTCCTGAAGCTTTTGCACAGTCATCACACATTTCTGGACTCCGAGACCAACTGGGAGCTGATGGTCTGGTGTGCTGCTCTGATGGTTTTCCTCCTACGCCTCGCTACCCTCGGAGCAGAGACCAACCGAAAATATAGCAACGCTTCTGTGCTACTGACTGAACAGATAAACTTGTATCTTAAGATGGAGAAGAAACCAAACAAAAAGGACCAGCTGAACATAGTGAACAACGTACTGAGGCTGGCCACGAAATTATTAAAAGAATTGGACACTCCATTTCGTCTGCTGGGTCTGACTGTGAATCCGCTTATCTACAATATCACAAGAGTGGTCATCCTGTCAGCCATCTCAGCTGCTGTCAGCGATTTACTAGGGTTCAACATCCGGACCGAGCAAACCTGTGTTCAGCTCAACTTTGTTGTTGAGTTTTCCTCATATTTGAACTGTAGAATCATTAAGCTCAAACCAGACTGCAGTGCGCTGTGTTTTTATAGCAGGAACAGTAAGCGAGTGATTAAGTCTGTCAGATTCAGTATGTCTGCATGGCTGCAGCAGGAGGCTGGTCCAACCAGTTCTGCTGAAGCAAAGAAATCAGAGCCCAGAGGCCAAGAGAAGAAATGCT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04344622_04358133.mRNA True 3693 mRNA 0.42 16 4343021 4358133

Neighbor

gene id symbol gene type direction distance location
CI01000058_04303891_04308850 NA coding upstream 34024 4303804 ~ 4308997 (+)
CI01000058_04272001_04275349 NA coding upstream 67590 4271906 ~ 4275431 (+)
CI01000058_04263520_04265153 NA coding upstream 77393 4263124 ~ 4265628 (+)
CI01000058_04174884_04175951 RHOL coding upstream 166191 4174800 ~ 4176830 (+)
CI01000058_03959155_03965275 SLC2A9L1 coding upstream 377423 3959155 ~ 3965598 (+)
CI01000058_04360496_04365634 PFKFB2, F262 coding downstream 2363 4360496 ~ 4366118 (+)
CI01000058_04405407_04408449 ID1 coding downstream 47274 4405407 ~ 4409395 (+)
CI01000058_04466648_04523385 ZMYND8 coding downstream 108063 4466196 ~ 4523483 (+)
CI01000058_04556260_04565696 FGD5A coding downstream 198024 4556157 ~ 4566008 (+)
CI01000058_04584028_04613429 FGD5A coding downstream 225895 4584028 ~ 4613747 (+)
G249970 NA non-coding upstream 2037 4340772 ~ 4340984 (+)
G249899 NA non-coding upstream 102126 4240237 ~ 4240895 (+)
G249886 NA non-coding upstream 124252 4217928 ~ 4218769 (+)
G249873 NA non-coding upstream 171929 4170590 ~ 4171092 (+)
G249869 NA non-coding upstream 188530 4154247 ~ 4154491 (+)
G249981 NA non-coding downstream 5574 4363707 ~ 4413637 (+)
G249980 NA non-coding downstream 59792 4417925 ~ 4418264 (+)
G249979 NA non-coding downstream 62215 4420348 ~ 4420792 (+)
G250013 NA non-coding downstream 93394 4451527 ~ 4452571 (+)
G250035 NA non-coding downstream 183866 4541999 ~ 4542243 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2545289 1794468 ~ 1800421 (+)
G247940 NA other upstream 2886574 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3054751 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3745850 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 3887277 434913 ~ 455744 (+)
G250039 NA other downstream 336275 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 468243 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004091 pfkfb2b coding NC_007122.7 CM002895.2 18784847 ~ 18819178 (-)