CI01000058_04556260_04565696 (FGD5A)


Basic Information

Item Value
gene id CI01000058_04556260_04565696
gene name FGD5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4556157 ~ 4566008 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04556260_04565696.mRNA
CTATTAATGCAAATGAACACAAGCTTAAAAACTGCTGCATAACAGACTGTTACAGTTGCTCTATAATCTTTAACTACACATATGCACTCTTCTATAACCCTGCATGGCTAGCGGTGTCGTATTGATTTGGCTTGAGAGGTCTTGGACTCCACAGGGAGCGCAGTCTTTGTTTGCTATTTTTGATGAAGTGCTGACTCCTGGCTTCACCTGTTTTTCTCCGGCAGTGTGTCATTGGTCGAGGGACTGGGGGAAGGCAGGTGTTATGAGAAGGGTGTTGAGAGACTCATATGAGCTCTGGGAAAAAGTCATTGACCCTCTTTCCCAATCAGTTTCCTGTTTAGGCATGTGCCATAATGCAGCCATCCAGGTGGAGGGGCACAGAGCTCTGCGGATCTGCTCGGTCAGAAATATTTGTTCACAAAAGTCTAAAAACATGTTTTTATCCTGTGCATATAGACCACATCTGCAGGGTTATTTATCGCAGAGCTATTCTTTCAGTCACCCCTTCAATTACAATGCCTACAAACACACTCCACTATGTGCCCGTCCCCACAGACGAAAACACATTTGTCTGATAAAACGAAAAAAAGGCTTTATGACAAATGTCCCGGGAATTGTTAGAAGCAATTCTAAACTTCTCAACCAAAGACAAAGCCATTTGACTATAACTGTGTTTTCCACCCTGATGTCAAGGCCTTGTCCTTCCACCCGAGGTCCTAAACCTCCTGTGGCACCCAAACCAAAGCTAGCCTCTGAACTGAGTCAAAGCATTGTGGGTAATGGGGACATAACATCCTCTGATAGACTGGAGCTGCAGCAGGACAATGAATCAGATGTCACACAGGATGAAACAGATGCATTCAGAGAAAACTGTACTGATGATCACATGGAGAGCGACTTATCTGAGTTTACTGTAAACTATGACACTAACCATGACACAACTTGTTATAATGAAATAGAGGAAGAATTACAAATGCCAGCAGATGAAACAATGGGGGAGGATGAAAATAAAGATTATACCACTGAAGTACAGCATGCAGCTTCTTCAAATTTGTTGGATGAAATTTGTGATTCAACAGATGAGGACCACAGCAAAAATGCTGATGATACCAAGCCAGCTGAAAATAGAGAAGATTCTTATAATGTACTTGAGGACACCTGTGCATGTTCTGAGAATGAGACACCTACTAAAGATCAGCCTGCAGATGAATCTCAAAGTCCGTATGAAGAAATTGAGGAACGACCATCAGACAGTTTTCAACGTGGCAATGATCAATATGAAGAGGACAATAGAGCAGGCGCAAACTGTGTTCATCATGAGGAAGAAGAAGAAGAGACTGGGCTTTCTTCAAAGGCTACAAACTGCAGTCAACCCTCACTATGTGAGGAATACCCTTATGACATTATTGGCACAGTGGATGATAACAGCACTTGGCAGGCTGAACGTGCAACCAAAGACCCATCTGGACGCTTCAGGTTTGCAGAGGAGACAGAAGACGCATTTGAGCCCTACTCTGTCATAGAGGTTGTGCCAAGTGATTTGACATGCACCTCTGATCCAGAAGCAAGATGCACTAATGAAGAATCCAGCAATGAGAAACCAACTGACTCAACAGAGGGAACATCAAACCAAGAGCCTTACTACGTATCATCGGACGACATGGCTGAGTTAGAGAAGGAACAGGCAAAATTAGAAAATGGTGTCTCTCAACCTGCTTCTGAGGGTCAAGAGATGGCAAAAAATGAAGGAGCGGATGACTATGCTGATATTGAAGACCATGATGGGGATGATCAGCAGGTGGAGTGTGTGTCATCTGAAGATTATGTTGAGATAGGAGACGAAGATGAGCCAGTAAACATGGAGAGAAAAACCAAGTGCAAAAGTATAAGAGAACGATCAGTTAAACGGGAAAAAGCCCTCTTGAGTCAGAGGAACAGCTGCCAACCACGTCTCAGACTTTGCAACATCACCGTTCCTGCTGACTTAGATTTAGGCAGAACTCCAGAACTTACAAACCGTTTGGTTTTTGCCCATACCACAGAAGCGTTTGAAGAGGACATTGAAGAGCTGGACTGCCATATTGTGCCTTTCTTTGAGGACTCGGACACAGAAAGTGACGAACACATTTATGAGGAGGCAGGCTTTGACTCAGAGGGTGAGAACTTTATTTCTCTGGACAGGAAGAGCATTGTGACAAGATCTCGCTCGCTCTCTGGGAAAGTACCTGGATATGTTCCTGAGACTGTGCCTGAGGAGACGGGCACTGAGTACCAATCTCACGACTACTACACTGTGGCCTTGGACCAGAATGGAGTTCCACAGCCCAAGCTTTCAGATGAAACAGAGGCCAACCGAATTATTCCCTCATTGAATCCAAGGCGCTTTCTTCTTTCTCCTCGATCGCTTTCTGTTGAGGGCAGAGATTTGCCATTCTCAGGGCACTTTGAAGGTGAGAAATCTCCTAGAGGGGAATGCAGATTGCAAAGAAAAGATGACACACTTTCTTTGCCTTGTGTTATTACTTCCTCTGGAAGCTTTTCTCAAAGAAGTCACCAGTCCTCCAGTGGTGTGTCGACACCTACATCTCTAGTCGATATCCCACCGCCCTTTGAGTTAGCTTACATAACTAAGAGGCCTGTGACCAAAAGCTCTCCATCACTTCTTATCCAACACGAGTCTCCTGACAACCCCAAAAAGAAGACAACATCATTTAAGCGTTTCTTGGCTTTAAAATTTAAGAAAAAATCAGAAAGCAAAGCCCGTGGAGATGGCAGTGTCCGCTCCTCCAGGTCATCATCTGAATCTAGCCACCATGGGCCCATTCGGGTGCTTGAGCTTGATCGAAGAAGTACAAGTGGCTCCCCGCAGCTTCAGTCCCGTGTGGGAAAGCCACAACACAACTCAGAAATACCTACCACCTTTCTGCTTTACAAAGAGAGGCATAGAAGGCAAGGTGCACCCAAGAGTTACAGCAACAGGGGTGTAGCCAGAGTGGAGTCCTTTGAGGACCGCTCTCGGCCCCCCTTCATGCCCCTACCCCTCACTAAGCCTCGCTCCATCTCCTTCCCAAGTGCAGATACTTCTGACTATGAAAACATTCCTGCAATGAGCTCAGATTATGAGAATATCCAGATTCCACATGGGCGGCCCACTCGGGCGGTCACTATTACAGATTTCTTTGATGACCACAATCGGACAGCAGCACCTGCCAATGAGAACGATGGCTATGTGGACATGAATAGCTTTGCAGGAATAGAAAACAAGACCACCACTCAAGAGCAAGACACTGAAAGGTATAGTCAGTCTTTTATAGAACTACATAATTAAAAATGAATATTTTCCACATTATGTTAATTTTTTTTAATCCTAAAAAGGATTAAAGAGATCTGAAATGAACTATTTTAAGAAGAATTATTTTGGTTTAAATCATCAGACTGTAGCGTAAGATTGTCTAGAGAGTTATATTTTGAATACTGAAACCCCTTCCTCTGAACACAATGGCAATACCATCACACAAGTCTGCAGGAAGTGCTGGCCAAAACAATGTTAACAGGAAATTAGGCAAGTGTTTGGTCACTCTGATAGCTCAGCTTGCACCTCACTCTGTCTCAGAACACTTTCTGTAATCTTCCTGGCTGA

Function

symbol description
fgd5a Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in blood island; cranial vasculature; and trunk vasculature. Orthologous to human FGD5 (FYVE, RhoGEF and PH domain containing 5).

NR:

description
unnamed protein product, partial

GO:      GO:0005089, GO:0046872, GO:0035023

KEGG:

id description
K05724 FGD5_6; FYVE, RhoGEF and PH domain containing 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04556260_04565696.mRNA True 3640 mRNA 0.44 5 4556157 4566008

Neighbor

gene id symbol gene type direction distance location
CI01000058_04466648_04523385 ZMYND8 coding upstream 32674 4466196 ~ 4523483 (+)
CI01000058_04405407_04408449 ID1 coding upstream 146762 4405407 ~ 4409395 (+)
CI01000058_04360496_04365634 PFKFB2, F262 coding upstream 190039 4360496 ~ 4366118 (+)
CI01000058_04344622_04358133 NA coding upstream 198024 4343021 ~ 4358133 (+)
CI01000058_04303891_04308850 NA coding upstream 247160 4303804 ~ 4308997 (+)
CI01000058_04584028_04613429 FGD5A coding downstream 18020 4584028 ~ 4613747 (+)
CI01000058_04637318_04650366 PRKCDB, PRKCD, PRKCDA coding downstream 71210 4637218 ~ 4650506 (+)
CI01000058_04656762_04675421 SFMBT1 coding downstream 90308 4656316 ~ 4676097 (+)
CI01000058_04678629_04687645 TMEM110 coding downstream 112094 4678102 ~ 4689520 (+)
CI01000058_04748480_04757498 QRICH1 coding downstream 182416 4748424 ~ 4757638 (+)
G250035 NA non-coding upstream 13914 4541999 ~ 4542243 (+)
G250013 NA non-coding upstream 103586 4451527 ~ 4452571 (+)
G249979 NA non-coding upstream 135365 4420348 ~ 4420792 (+)
G249980 NA non-coding upstream 137893 4417925 ~ 4418264 (+)
G249981 NA non-coding upstream 142520 4363707 ~ 4413637 (+)
G250049 NA non-coding downstream 110905 4676913 ~ 4677151 (+)
G250075 NA non-coding downstream 161801 4727809 ~ 4738445 (+)
G250098 NA non-coding downstream 317997 4884005 ~ 4884279 (+)
G250095 NA non-coding downstream 318454 4884462 ~ 4885100 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2758425 1794468 ~ 1800421 (+)
G247940 NA other upstream 3099710 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3267887 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3958986 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 4100413 434913 ~ 455744 (+)
G250039 NA other downstream 128400 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 260368 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location