CI01000058_04584028_04613429 (FGD5A)


Basic Information

Item Value
gene id CI01000058_04584028_04613429
gene name FGD5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4584028 ~ 4613747 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04584028_04613429.mRNA
ATGGCTTTGCCTGTGAAGACATTTGAGAGCAGATTTTACCCCTTCCTAGCGATTAATAAGGACTTCAGGGGAGCAGTGGAGTCAGCAGTAGGAAATGATGAGGAACCTCTGTTAGAAAATGGGAAGCTGGACGAGATCCTGAGCACTCTTCCTCAGGCCTACCATCTGCACAATGAGATCCTCAATGAGATGGAGACCCGCATTAAACAGTGGGAGGACAGCCCGTCAGTGGTTGATGTCATATTAACGCGCCGGGCTGAGTTTTCATCCTTTGCGACCTACATCTCAGACTATGACCGCAGCATGTCACTGCTGGAGGAGAGCTGTAGACAGAGTAAAGCTTTCGAGGATGTGGTAAAACAGTTTGAGACGCAGAATGCAGAAGGAGTTCATGTACCTCTGAAACACCAGCTGCTGCGGGTCATTGTGCGTGTGCTCCAGTACCGCATGCTGCTCACAGATTACTTAAACAATCTCTCCCCGGATTCAAAAGAGTATGAAGACACACAAGCTGCACTGGTAATCGTGTCAGAGGTCGCAGACCAGGTTAATGACAATCTAAAACATGGGGAGAACCTGCTTCGTTTGGTCCATATTGACTATAGCGTGAGAGGAAAAAGAGACCTTCTCCAACCAGGAAGGGTTTTTGTCAAGGAGGGCACACTGATGAAGGTCTCTCGTAAAAGCAGGCAGCCCAGACACCTCTTCCTGATGAATGACGTGATGCTGTACACCTACCCTCAGCAGGATGGCAAATACAGGCTAAAGAACACGCTGACTTTAAGTGGAATGAAGGTCAGTAAACCTGTCATAGACAATGTGCTCAACACGCTCAGGATAGAAGTCAGCGATGTTACCATCACCCTCTCAGCAAGTTCTTTAGGCGAGAGAGAAGACTGGTTCCACACGTTGAGCCGGGCTATAGCGGATCACGCTGCAGGCCTCAATACCTTCAGCTGCTCTAGTGAGGCGAGAGAGAAGTTATGGATGTCTCTGGGAGAGGCTGCTCCTGTGCTAGTTCCTGTGTCACATGTGATGATGTGCATGAACTGCACGTCAGACTTCAGCCTAACACTGCGACGGCATCACTGCAACGCATGCGGAAAGGTTGTGTGTCGTTCCTGCTCGCGGAACAGGTATCCTCTGAAGTACCTGAAGGACAGGATGGCTAAAGTCTGTGATCACTGCTACGCTGAGCTCAGGAAGAGGGAGCCTACAGCCGCCCAGCCTGTGGAGGAACAGAAAGAGCAGCTCACCTCTCACACAGAGGGGTCCACTATCAGTGGCAGTCTGCAAAGACGCAAAAAGAGCAAAAGGAAGTGGAAGAGGCTGTGGTTCCTGCTCAAAGACAAGGTGCTCTACACCTTTAAAGCACGAGAGGATAAAGTGGCATCTGAAAGTCTTCCTCTGCAGGGCTTTACTGTGAAGCTGTCTGATCGATCAGAGGGGGAAGACACAGACAATGTTTTCCAGCTCTACCATAAAAAAACACTGTATTATACCTTCAGAGCAGATGACCAGCATACTGCACGCAGGTGGGTAAACGCTATGGAAGAGGCCACAGTGTTATAGTATCCGGCTATCTGCCCAGATGACAGGAGGACTCTGGGCAGGGTTCCCCAGACAGCTAAACCCATTATGGGCTTAAACCTATGACATCAGAGTCACCTGTGCCTGAGAAACCAGCGGAATCACACCACAAATACCTTCGTTTTTTTTTTTCTTATCTTCTTTTTGGCTGCTGAATTTAAGGACAGTCACACAAGGCATATCATGCTCAGTGTTTGTTGTCCTGTGCCTCACTTTCTTCACAGACTAATTCAAAAAAGTGCCAAATGTAAACAGTGCAGTTCAGTGAATGATTGTTCTGAAACTACTCACATGTGTCGA

Function

symbol description
fgd5a Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in blood island; cranial vasculature; and trunk vasculature. Orthologous to human FGD5 (FYVE, RhoGEF and PH domain containing 5).

GO:      GO:0005089, GO:0046872, GO:0035023

KEGG:

id description
K05724 FGD5_6; FYVE, RhoGEF and PH domain containing 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04584028_04613429.mRNA True 1890 mRNA 0.49 17 4584028 4613747

Neighbor

gene id symbol gene type direction distance location
CI01000058_04556260_04565696 FGD5A coding upstream 18020 4556157 ~ 4566008 (+)
CI01000058_04466648_04523385 ZMYND8 coding upstream 60545 4466196 ~ 4523483 (+)
CI01000058_04405407_04408449 ID1 coding upstream 174633 4405407 ~ 4409395 (+)
CI01000058_04360496_04365634 PFKFB2, F262 coding upstream 217910 4360496 ~ 4366118 (+)
CI01000058_04344622_04358133 NA coding upstream 225895 4343021 ~ 4358133 (+)
CI01000058_04637318_04650366 PRKCDB, PRKCD, PRKCDA coding downstream 23471 4637218 ~ 4650506 (+)
CI01000058_04656762_04675421 SFMBT1 coding downstream 42569 4656316 ~ 4676097 (+)
CI01000058_04678629_04687645 TMEM110 coding downstream 64355 4678102 ~ 4689520 (+)
CI01000058_04748480_04757498 QRICH1 coding downstream 134677 4748424 ~ 4757638 (+)
CI01000058_04769469_04774262 TWF2B, TWF2 coding downstream 155722 4769469 ~ 4774485 (+)
G250035 NA non-coding upstream 41785 4541999 ~ 4542243 (+)
G250013 NA non-coding upstream 131457 4451527 ~ 4452571 (+)
G249979 NA non-coding upstream 163236 4420348 ~ 4420792 (+)
G249980 NA non-coding upstream 165764 4417925 ~ 4418264 (+)
G249981 NA non-coding upstream 170391 4363707 ~ 4413637 (+)
G250049 NA non-coding downstream 63166 4676913 ~ 4677151 (+)
G250075 NA non-coding downstream 114062 4727809 ~ 4738445 (+)
G250098 NA non-coding downstream 270258 4884005 ~ 4884279 (+)
G250095 NA non-coding downstream 270715 4884462 ~ 4885100 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2786296 1794468 ~ 1800421 (+)
G247940 NA other upstream 3127581 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3295758 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 3986857 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 4128284 434913 ~ 455744 (+)
G250039 NA other downstream 80661 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 212629 4864571 ~ 4888216 (+)

Expression


Co-expression Network