CI01000058_04637318_04650366 (PRKCDB, PRKCD, PRKCDA)


Basic Information

Item Value
gene id CI01000058_04637318_04650366
gene name PRKCDB, PRKCD, PRKCDA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4637218 ~ 4650506 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04637318_04650366.mRNA
ACATAAAACAGTTTTTTGCCAGAGTGGCCAGCAAACTCCAGCAAACACTGATCTTTATCAATTTTCTTTCTTTTGTATGTAGGCCCAGTGATCTCTCAACATGGCTCCGTTCCTGCGGATTGCCTTTAATGAATTTAACCTGGGAGACCTTCCTCCTATGACAGAGGAACCATTCTGTGCCATCAAAATGAAGGAATCGCTCAGCACAGAGCGAGGGAAGACGCTGGTCCAGAGGAAGCCCACCATGTACCCTGCGTGGAAATCCCCATTTGACGCACACATCTATGAGGGCCGAGTCATACAGGTGGTCCTGATGAAGACCGCAGAGGAGGCTCTGTCGGAGGCCACGGTCGGGGTCTCTGTCATTGCCGAGCGCTGCAAAAAAGGCAATGGTCGTGCAGAGTTCTGGGTGGACCTGCAGCCCTCTGGGAAGGTGATGATGTCTGTCCAGTTCTTTGTCGAGGATACAGACCTAGATTCAAAGTCCTTAATGTCTGCGAAAGAGGAAGATGGCATCCTCACAATAAACAGAAGGAGAGGAGCCATCAAACAGGCCAAGGTTCACTTCATCAAGAACCACGAGTTCACAGCCACCTTCTTCAAACAGCCCACCTTCTGCTCGGTCTGCAGGGAGTTTGTGTGGGGTCTTAACAAGCAGGGCTACAAGTGTAGGCAATGTAATGCGGCCATTCACAAGAAGTGCATTGATAAGATCATTGGGAGATGCACAGGAACAGCAACCAACAGTCGAGATACAGTGTTTCAGAAGGAGCGCTTTAAGATTGACATGCCACATCGCTTCAAGACCCATAACTACATGAGTCCGACCTTCTGCGACCACTGTGGGAGTCTGCTGTGGGGAATGGTCAAACAAGGCCTCAAGTGTGAAGAATGTAGTATGAACATCCATCATAAATGCCAGACCAAGGTTGCCAACCTCTGCGGAATCAACCAGAAGCTCCTGGCTGAGGCTTTGACTCAAGTTAGCCTGAAATCTTCCACAAAGCGTCCAGATCCCACTCTGTCAGAAATTGGAATCTATCAAGCCATAGATAAAAACATGCCAGTGGACCCTAGTGTGTTAGCGGCAGCCTCTCAGTATGGCAAACTATGGGATGATACGACCCCTGCCCCTCCCAGCAACACCATCCCATCCCGCGTCTCCATGAGCAACTTTGTGTTCCATAAGGTCCTGGGCAAAGGCAGCTTTGGAAAGGTGTTGCTGGCCGAGCTCAAAGGAAAGGGAGAATATTTTGCTGTAAAGGCCCTGAAGAAAGATGTTGTGCTTATGGATGATGATGTGGAGTGCACAATGGTAGAAAAAAGAGTGTTAGCATTAGCATGGGAAAACCCTTTTCTTACACACCTCTTCTGCACCTTTCAGTCGAAGGAGCACTTATTCTTTGTGATGGAGTATCTGAATGGAGGAGATCTGATGTTCCACATTCAGGATAAGGGGCGTTTTGATTTGTACAGAGCCACGTTCTATTCTGCTGAAATCATCTGTGGACTACAGTACCTCCACTCTAAAGGCATTATATACAGAGATTTAAAGTTGGACAATGTGATGCTGGACAAGGATGGACATATTAAGATTGCAGACTTTGGGATGTGCAAAGAGAACATGCTTGGAGAAAACAGAGCTACCACATTCTGTGGCACACCAGATTATATTGCTCCTGAGATCCTGCTGGGACAGAAATACAGTTTCTCTGTGGACTGGTGGTCATTCGGCGTGCTTCTCTACGAGATGTTGATTGGCCAGTCGCCGTTCCAGGGCGATGATGAGGACGAGCTGTTCGAGTCGATCCGCATGGATGTACCTCACTACCCACGATGGATTACCAAGGAGGCCAAAGACCTGCTGGAGAAATTATTTGAGAGGGATCCCACCCGACGGCTTGGTGTTGTGGGAAATATCCGTGGACATGCTTTCTTCAAGACAATCAACTGGACTGCACTGGAGAAACGAGAGGTGTCTCCGCCATTCAAGCCAAAAGTGAAATCCCCCAACGACTGTAGCAACTTTGACCGGGAGTTCCTCAGCGAGAAACCCCGTCTCTCTCAAAGCGACAAGAACCTGATTGACTCTATGGACCAGACTGCCTTTAATGGCTTCTCTTTCATTAACCCTAAAATGGACACCATTCTGGAGAAATGAGACATTTTGGCCAGGATCCTCTAAACCTGCCCCACTTCAATCACAAATGGCATACAGGAGCCAGGAGTTCAACCAGTGTTACACTTGGTGTACTTTCTGGATGGTGCAAATAGATAATGCTGTATTTATGTTGTCTTTAA

Function

symbol description
prkcdb Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within apoptotic process and protein phosphorylation. Predicted to be located in nucleus and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in autoimmune lymphoproliferative syndrome type 3; fatty liver disease; and hypertension. Orthologous to human PRKCD (protein kinase C delta).
prkcda Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within apoptotic process and protein phosphorylation. Located in immunological synapse. Is expressed in blood; myotome; nervous system; otic vesicle; and somite. Human ortholog(s) of this gene implicated in autoimmune lymphoproliferative syndrome type 3; fatty liver disease; and hypertension. Orthologous to human PRKCD (protein kinase C delta).
prkcd Enables enzyme activator activity; protein kinase binding activity; and protein serine/threonine kinase activity. Involved in several processes, including cellular response to oxidative stress; positive regulation of cellular metabolic process; and protein phosphorylation. Located in several cellular components, including cytosol; endolysosome; and endoplasmic reticulum. Implicated in autoimmune lymphoproliferative syndrome type 3 and fatty liver disease. Biomarker of hypertension and portal hypertension.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06068 PRKCD; novel protein kinase C delta type

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04637318_04650366.mRNA True 2301 mRNA 0.48 15 4637218 4650506

Neighbor

gene id symbol gene type direction distance location
CI01000058_04584028_04613429 FGD5A coding upstream 23471 4584028 ~ 4613747 (+)
CI01000058_04556260_04565696 FGD5A coding upstream 71210 4556157 ~ 4566008 (+)
CI01000058_04466648_04523385 ZMYND8 coding upstream 113735 4466196 ~ 4523483 (+)
CI01000058_04405407_04408449 ID1 coding upstream 227823 4405407 ~ 4409395 (+)
CI01000058_04360496_04365634 PFKFB2, F262 coding upstream 271100 4360496 ~ 4366118 (+)
CI01000058_04656762_04675421 SFMBT1 coding downstream 5810 4656316 ~ 4676097 (+)
CI01000058_04678629_04687645 TMEM110 coding downstream 27596 4678102 ~ 4689520 (+)
CI01000058_04748480_04757498 QRICH1 coding downstream 97918 4748424 ~ 4757638 (+)
CI01000058_04769469_04774262 TWF2B, TWF2 coding downstream 118963 4769469 ~ 4774485 (+)
CI01000058_04777182_04780095 NA coding downstream 126036 4776542 ~ 4780376 (+)
G250035 NA non-coding upstream 94975 4541999 ~ 4542243 (+)
G250013 NA non-coding upstream 184647 4451527 ~ 4452571 (+)
G249979 NA non-coding upstream 216426 4420348 ~ 4420792 (+)
G249980 NA non-coding upstream 218954 4417925 ~ 4418264 (+)
G249981 NA non-coding upstream 223581 4363707 ~ 4413637 (+)
G250049 NA non-coding downstream 26407 4676913 ~ 4677151 (+)
G250075 NA non-coding downstream 77303 4727809 ~ 4738445 (+)
G250098 NA non-coding downstream 233499 4884005 ~ 4884279 (+)
G250095 NA non-coding downstream 233956 4884462 ~ 4885100 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2839486 1794468 ~ 1800421 (+)
G247940 NA other upstream 3180771 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3348948 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 4040047 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 4181474 434913 ~ 455744 (+)
G250039 NA other downstream 43902 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 175870 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004086 prkcdb coding NC_007122.7 CM002895.2 18343890 ~ 18384534 (-)