CI01000058_04782847_04791049 (UBA3)


Basic Information

Item Value
gene id CI01000058_04782847_04791049
gene name UBA3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4782847 ~ 4791555 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04782847_04791049.mRNA
GTTGCGCATTTCACTTTGAAGCTCTATGACAATATGGCGGAAGGAGAGGAACCGGAGAAGAAAAGAAGGAGAATAGAGGAGCTGAATGAGAACATGGTTGTGGATGGAGGGAGTTGGGATGGCAGTGACTGGCAGGGACGATGGGATCATGTGACAAAGTTCTTAGAGAGAGCTGGACCATTCACTCATCCGGATTTTGAACCCAGCACTGAGTCTCTCCAGTTTTTGTTGGACACATGCAAAATTCTGGTTATTGGAGCTGGTGGACTTGGATGTGAGCTGCTCAAAGATCTGCTATCTCTGCTGATTTATGAAGATGGTGTCCTGGATCCCAGCTCCATTATTCCTCTAATAGATGGTGGCACAGAGGGCTTCAAGGGCAATGCCAGAGTCATTCTTCCGGGCATGACAGCTTGCATTGATTGCACACTGGAGCTTTACCCCCCTCAGATAAACTTCCCAATGTGCACTATAGCCTCTATGCCACGGTTACCTGAACATTGTGTTGAATATGTCCGCATGCTGCTTTGGCCCAAAGACAAGCCATTTGGAGATGGTGTGGCGCTAGACGGTGATGATCCAAATCACATCCAGTGGGTGTACCAGAAATCTCTGGAGAGAGCAGCGGAGTTCAACATCACTGGGGTGACTTACAGACTCACTCAGGCTGCTTGTGCCACAGAGGTTTTCAAAATTGCTTCAAGCGCCTATGTTCCCTTGAACAATTACCTGGTGTTCAATGATGTTGATGGGCTGTACACGTACACCTTTGAGGCTGAGAGAAAGGAGAACTGTTCTGCCTGCAGTCAGGTGCCACAGGACCTGCAGTTCCCACCCTCAGCTAAACTGCAGGATATTCTGGACTATTTGACCGAGAATGCCGCTCTCCAAATGAAGTCTCCTGCCATCACTACAACTTTGGATGGAAAAAACAAAACTCTGTATTTACAGACTGTGGCATCTATTGAAGAGAGAACGCGACCAAATCTAAGCAAAACACTGAAAGAGCTTGGACTAGTGGATGGCCAAGAGCTGGCAGTGGCTGATGTCACCACTCCTCAGACTGTGCTCTTCAAGCTCAACTTCATCTCATAGGACAAATGCTTCATTCTTATGGACAGTGGTTATTGCAGTCACCATCAAAATGAAGCAGACTTGGAAATGTAGTCTGTAAGCTCCCTGTTTCAGTGCATCAACAGTGGCACACATGTTCAGTTGGAATAGCTGTGGTTTGTATTTAGCTTTTTTGGTCAACTCTGTCCATCAAAGACACTTACAGAAGGCGATTGTTTCGTTGTCTTGCACTGCTATAGCCGTAGGAGTCATTTTGGTGGATTTCTTTTTATGCAAACTGTTTATCTATTTATTTTGTTGTTGTGCATTCAGACCAGTTGACAGTATCTTGTTCAATGTCTTGTAGAAAAAAAGAAATCATTCATGTTTTGAATTAAAATTGGAAACCTTATTTTAAACAAGTACTGAAGTCCTAGTCCTGTATTGTTTTCCTAACTTTAAATTTAAAATATCCTTTTACCCAATTTGTGAACAAATTTACTTGGTTAAATATTTAAAAAGGCTCAAAATATGATGGAATCTCCAGA

Function

symbol description
uba3 Predicted to enable NEDD8 activating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBA3 (ubiquitin like modifier activating enzyme 3).

GO:

id name namespace
GO:0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity molecular_function

KEGG:

id description
K10686 UBA3, UBE1C; NEDD8-activating enzyme E1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04782847_04791049.mRNA True 1601 mRNA 0.44 13 4782847 4791555

Neighbor

gene id symbol gene type direction distance location
CI01000058_04777182_04780095 NA coding upstream 2471 4776542 ~ 4780376 (+)
CI01000058_04769469_04774262 TWF2B, TWF2 coding upstream 8362 4769469 ~ 4774485 (+)
CI01000058_04748480_04757498 QRICH1 coding upstream 25209 4748424 ~ 4757638 (+)
CI01000058_04678629_04687645 TMEM110 coding upstream 94352 4678102 ~ 4689520 (+)
CI01000058_04656762_04675421 SFMBT1 coding upstream 106750 4656316 ~ 4676097 (+)
CI01000058_04792565_04803181 TMF1 coding downstream 1010 4792565 ~ 4803404 (+)
CI01000058_04806751_04821030 NA coding downstream 15196 4806751 ~ 4821695 (+)
CI01000058_04864571_04888198 NA coding downstream 73016 4864571 ~ 4888216 (+)
CI01000058_04923557_04926609 NA coding downstream 131735 4923290 ~ 4927654 (+)
CI01000058_05091135_05091372 NA coding downstream 299580 5091135 ~ 5092015 (+)
G250075 NA non-coding upstream 44402 4727809 ~ 4738445 (+)
G250049 NA non-coding upstream 105696 4676913 ~ 4677151 (+)
G250035 NA non-coding upstream 240604 4541999 ~ 4542243 (+)
G250013 NA non-coding upstream 330276 4451527 ~ 4452571 (+)
G250098 NA non-coding downstream 92450 4884005 ~ 4884279 (+)
G250095 NA non-coding downstream 92907 4884462 ~ 4885100 (+)
G250120 NA non-coding downstream 113385 4904940 ~ 4905140 (+)
G250124 NA non-coding downstream 126817 4918372 ~ 4918573 (+)
G250187 NA non-coding downstream 293085 5084640 ~ 5137852 (+)
G250039 NA other upstream 85686 4694408 ~ 4697161 (+)
CI01000058_01794468_01800421 KISS1 other upstream 2985115 1794468 ~ 1800421 (+)
G247940 NA other upstream 3326400 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3494577 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 4185676 592331 ~ 597171 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location