CI01000058_04806751_04821030


Basic Information

Item Value
gene id CI01000058_04806751_04821030
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4806751 ~ 4821695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000058_04806751_04821030.mRNA
ATGCTGCTGCTGGTAGCTCTGTGTCTGGTCTGCACTTATAAAACCATCTCCGCCACAGACAGCGTCCAGAACAGCAGCCGCACGCCACAGCTGGACTACAGCAGCCTGGCGCTGCCTCAGCAGCATATTCCATTCTTTCTGCACAACAACATACCACTGGCCAAACTCTGCAAGGAAGACCCGCTTTGCCCTTTTAAAGATGCTCTGTTGCTCAAGAAGGCCTGCTGGGGATATGAAAAGAGCTGCTCCGCTGAGCACAGATTCAGCTATCCTGTGTGCACCAGTCTTGACTCAGGATGGGCGAGCTCTATTCAGGCTGCCCAGGAGCTGTTCTGGAAACAGGCAGATTTTGGCTATGTGAGGGAGCGTCTCAGTGAGATGAAGACATTGTGCAAGCCGTCAAGTCCTTCATATGCGGTTCTGCATGGCCACAAATCTGTACCTGGACCTGAGGAGTCCCCGCAGGGGTCACGAGAGACATACTCAGAGCTTGACTTCCACCCCCTGGACGATGGCCATTGTGATGTTATAATTGATAGACCAACCGTCTTCATGAAGCTTGATGCAGGAGTGAACATGTACCATCATTTCTGTGACTTTGTTAACCTCTACATCTCGCAACACCTCAACAATTCCTTCAGTCGTGACATAAACATCGTCATGTGGGACACAAGTGTGTATGGATATGGAGACCTGTTCAGTGAAACGTGGAAGGCTTTCACACATTATGACATCATTCACCTCAAAAACTTTGACTCCAAAAGGATCTCTGACTGCCACAGCGAGGGGCTGTTCAAGGCATTTTCCCAGCATGTCCTTTATCGACTCAAAATCCCACAAGATGGACCGAAGGAGCGCCAAGTCCGTGTCACTCTGTTGGCAAGAAGCACTGAGTACCGTAGGATAATAAACCAGCAGGAGCTTATCAATGCCCTGAAGACTGTGCCTTTATTCGAGGTCAAGCTGGTGGATTACAAATTCAAAGAGATGCCGTTTCTGGAGCAGATCCACGTCACACACAACTCTGATATCTTCATTGGGATGCATGGAGCCGGACTGACCCACCTCCTCTTTCTTCCCGACTGGGCCGTCATATTTGAATTGTACAACTGTCAAGATGAGAGCTGCTACCGTGATCTGGCCCGACTGAGGGGAGTCCATTACATGACTTGGCAGAAAAGGGACAAAGTGTTCCCCCAGGATAAGGGTCATCACCCTACTCTTGGGGAACATCCTAAGTTTACCAACTACACTTTTGACGTAGAGGAGTTCATGCGGTTAGTCCTTCTAGCGGCCGAACATGTGACCCGGCACCCGGAGTGGCACGCAAAACAAGCCCGAGATGAACTGTAGCCTGTAAAACATGGAACATCTTCTGCAAGGATGAACAATGAACACACTCCTACGAACTCTCTGCACTCTTATACTCCTATAGCTATGCTAACGAAAAGCAAATGGCTAATATGTGAAAGCACATTTTACTTTCAGAAAAAAGCATCTGCTCTGATCCTGTTACATTCTGAAGCTGTTACATTCTGCACATGGAGGTGATGGGTATGTTGTTAAAAGACTCACACTTCAGTAGAAGATGTATTGTTTTGATGTATTTTGTGTGGTTTGTACCTACCCTCAGGTATATGTGGGCTTTTTATAGAGACTACACTTTTACACCTGATTTAAGTGCAGCTTTGTGATTTATTTCAAAATTGCTATGGGTTGAATTTCAATACAGTTTATAAGACACCTTTAGACAGCACTCCACCCCCCCCTTTGGGTACTGAACTAATGTTGAGTCCACCCACATAGATTGGTAGCATTTTTTATGACAGTCAAACCACATTTAAAGCATTTTTATTTTGCTTTTAAATGCATTAAGGCAAGGGAGATGACTTCATATTTATTACAGTGTCAGTTACTTTTTAATTTGTAGTCATTATGTAAATGCAAAACACTCCAGTCCTGTTGCACTCACTAGAGTGTTCGGTATTGCTTCACTTTATAAAGTATTTCTATCAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000058_04806751_04821030.mRNA True 2018 mRNA 0.46 13 4806751 4821695

Neighbor

gene id symbol gene type direction distance location
CI01000058_04792565_04803181 TMF1 coding upstream 3347 4792565 ~ 4803404 (+)
CI01000058_04782847_04791049 UBA3 coding upstream 15196 4782847 ~ 4791555 (+)
CI01000058_04777182_04780095 NA coding upstream 26375 4776542 ~ 4780376 (+)
CI01000058_04769469_04774262 TWF2B, TWF2 coding upstream 32266 4769469 ~ 4774485 (+)
CI01000058_04748480_04757498 QRICH1 coding upstream 49113 4748424 ~ 4757638 (+)
CI01000058_04864571_04888198 NA coding downstream 42876 4864571 ~ 4888216 (+)
CI01000058_04923557_04926609 NA coding downstream 101595 4923290 ~ 4927654 (+)
CI01000058_05091135_05091372 NA coding downstream 269440 5091135 ~ 5092015 (+)
G250075 NA non-coding upstream 68306 4727809 ~ 4738445 (+)
CI01000058_04678629_04687645 TMEM110 non-coding upstream 117231 4678102 ~ 4689520 (+)
G250049 NA non-coding upstream 129600 4676913 ~ 4677151 (+)
G250035 NA non-coding upstream 264508 4541999 ~ 4542243 (+)
G250013 NA non-coding upstream 354180 4451527 ~ 4452571 (+)
G250098 NA non-coding downstream 62310 4884005 ~ 4884279 (+)
G250095 NA non-coding downstream 62767 4884462 ~ 4885100 (+)
G250120 NA non-coding downstream 83245 4904940 ~ 4905140 (+)
G250124 NA non-coding downstream 96677 4918372 ~ 4918573 (+)
G250187 NA non-coding downstream 262945 5084640 ~ 5137852 (+)
G250039 NA other upstream 109590 4694408 ~ 4697161 (+)
CI01000058_01794468_01800421 KISS1 other upstream 3009019 1794468 ~ 1800421 (+)
G247940 NA other upstream 3350304 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 3518481 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 4209580 592331 ~ 597171 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004075 eogt coding NC_007122.7 CM002895.2 17726649 ~ 17755444 (-)