G247176


Basic Information

Item Value
gene id G247176
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 61870 ~ 62126 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU280532
TTAATAAGCCATATATTATTTTTGTGTAGTGATGTAATTATATTTCTGTGCCATTCTATTAAGTTAACCGAACAATAAACTAGTAATTATGCTTAATTACTGATGGTTTTGCAGTTATAAATTGCTAAAATAGTATAATAAAGACAATTTGACCCCCAAAGTGAAAGGTATATCCACATTAATTATGGCACTTATTGAGAGATATTCAAGTTTATTGACCAGAATAAGGCAATATTTAAGGCCAAACTGCCATTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280532 True 257 lncRNA 0.28 1 61870 62126

Neighbor

gene id symbol gene type direction distance location
CI01000058_00043409_00059894 NA coding upstream 1448 43409 ~ 60422 (+)
CI01000058_00021632_00039608 NA coding upstream 21900 21480 ~ 39970 (+)
CI01000058_00104333_00105839 NA coding downstream 42207 104333 ~ 106724 (+)
CI01000058_00241253_00245763 NA coding downstream 179127 241253 ~ 246107 (+)
CI01000058_00313907_00314170 NA coding downstream 251631 313757 ~ 314670 (+)
CI01000058_00333202_00355871 PANK4 coding downstream 270914 333040 ~ 355875 (+)
CI01000058_00382692_00395743 NA coding downstream 320566 382692 ~ 395774 (+)
G247165 NA non-coding upstream 7232 54196 ~ 54638 (+)
G247163 NA non-coding upstream 8768 52884 ~ 53102 (+)
G247162 NA non-coding upstream 9192 52383 ~ 52678 (+)
G247160 NA non-coding upstream 9942 51547 ~ 51928 (+)
G247155 NA non-coding upstream 11549 50018 ~ 50321 (+)
G247192 NA non-coding downstream 80629 142755 ~ 143591 (+)
G247257 NA non-coding downstream 165771 227897 ~ 228534 (+)
G247300 NA non-coding downstream 253853 315979 ~ 316343 (+)
G247309 NA non-coding downstream 270136 332262 ~ 332527 (+)
G247314 NA non-coding downstream 359004 421130 ~ 421530 (+)
CI01000058_00435196_00437830 AGTRAP other downstream 372916 434913 ~ 455744 (+)
CI01000058_00592498_00596709 NA other downstream 530205 592331 ~ 597171 (+)
CI01000058_01280337_01289153 DNASE2B other downstream 1166483 1278592 ~ 1289874 (+)
G247940 NA other downstream 1390871 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 1733587 1794468 ~ 1800421 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003816 NA non-coding NC_007122.7 CM002895.2 1911551 ~ 1915454 (-)