G247257


Basic Information

Item Value
gene id G247257
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 227897 ~ 228534 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU280618
TAAACACTGCACTTGCAAAATCTCACTTCACTTAATAAATACAGTTGGGTCATAATATTTTGTCTCTTTTCAGACCCCAGCCTGGGTTCAGTGATGGACATGACAGCCCTACGAAATGTGCAGCCAAACAGGGCATGCTGGATGCATCCACAAAGCAGTGACCAAATGAAGATGATAAAAAATGCTTTAAATGAAAAGGAATCACGACAACAATTTTGGGCTCAAGTAGGAGAAACAATTCTGGACAGATTTTATTACCTTGGGACATCCAAATGATGTTGAAGGGACTATTTTGAATGCTTGCCTTTCAGTTATCAGAGATATTGCTGACTTAAAGAACATAAAGGTCCATTGTTTTAGCTCATATGTGACAGTGACATGGTTGCCACCATTGTGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU280618 True 399 lncRNA 0.40 4 227897 228534

Neighbor

gene id symbol gene type direction distance location
CI01000058_00104333_00105839 NA coding upstream 121173 104333 ~ 106724 (+)
CI01000058_00043409_00059894 NA coding upstream 167475 43409 ~ 60422 (+)
CI01000058_00021632_00039608 NA coding upstream 187927 21480 ~ 39970 (+)
CI01000058_00241253_00245763 NA coding downstream 12719 241253 ~ 246107 (+)
CI01000058_00313907_00314170 NA coding downstream 85223 313757 ~ 314670 (+)
CI01000058_00333202_00355871 PANK4 coding downstream 104506 333040 ~ 355875 (+)
CI01000058_00382692_00395743 NA coding downstream 154158 382692 ~ 395774 (+)
CI01000058_00435196_00437830 AGTRAP coding downstream 206379 434913 ~ 455744 (+)
G247192 NA non-coding upstream 84306 142755 ~ 143591 (+)
G247176 NA non-coding upstream 165771 61870 ~ 62126 (+)
G247165 NA non-coding upstream 173259 54196 ~ 54638 (+)
G247163 NA non-coding upstream 174795 52884 ~ 53102 (+)
G247162 NA non-coding upstream 175219 52383 ~ 52678 (+)
G247300 NA non-coding downstream 87445 315979 ~ 316343 (+)
G247309 NA non-coding downstream 103728 332262 ~ 332527 (+)
G247314 NA non-coding downstream 192596 421130 ~ 421530 (+)
G247293 NA non-coding downstream 197224 425758 ~ 426095 (+)
G247316 NA non-coding downstream 198713 427247 ~ 427462 (+)
CI01000058_00592498_00596709 NA other downstream 363797 592331 ~ 597171 (+)
CI01000058_01280337_01289153 DNASE2B other downstream 1000075 1278592 ~ 1289874 (+)
G247940 NA other downstream 1224463 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 1567179 1794468 ~ 1800421 (+)

Expression


Co-expression Network