XLOC_010126 (myo1eb)


Basic Information

Item Value
gene id XLOC_010126
gene name myo1eb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38201840 ~ 38238909 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020093
ggaaaaactCGGCGATACCTGTCTCCACTTGCCGTTGCATGGACAACACCCGTGAAGCCAAATATTCAATCGCTTCACGACACATGAAACGCTACATGCAGACTCGTTTTGGATAAAACTATGAAACTGGAAAGGTTGTAGGTGCAATATCAGATGGACGACTAGTTAAATTCTGGAGTTTCACCTGAAGCCGAAAGAGTTCCTCGAAGAGTTTCACACGGGACTCAAAAGTTTGTCAAGGTGTGATACAGGAAGTACGTCTAATTCATCATGGGGAGCAAGGAGAAATATCACTGGCAGACCCAGAATGTGAAGGTCAGTGGTGTGGATGACATGGTCCTCTTGTCTAAGATCACAGAGGACGCCATTACAGACAACCTCAAGAAGAGATACATGGATGATTACATTTTCACATACATCGGTCCTGTTCTGATATCAGTGAACCCTTTTAAACAGCTGCCGTATTTCACAGACCGAGAGATTGAACTGTATCAGGGAGCTgcaCAGTATGAGAATCCACCCCACATCTACGCTCTGGCTGATAACATGTACCGCAACATGATGATCGACTCTGAGAACCAGTGTGTCATTATAAGTGGAGAGAGTGGAGCGGGGAAAACAGTGGCAGCCAAATACATCATGAGCTACATCTCCAAAGTGTCTGGGGGTGGACCCAAAGTTCAGCATGTTAAAGACATCATTCTGCAGTCTAACCCGCTGCTGGAGGCTTTTGGGAATGCTAAAACCGTCAGAAACAACAACTCCAGTCGCTTTGGAAAATACTTTGAAATTCAGTTCAGCCGAGGAGGAGAACCTGATGGGGGAAAGATCTCTAACTTCCTGCTGGAAAAATCCAGAGTAGTGTCTCAAAACAATGGAGAAAGGAATTTTCATATATACTACCAGCTTTTGAAAGGAGCCACCAAAGAGCAGAGAGAGAATTTAGGAGTCACGACTCCTGATTACTACTTTTATTTAAACCAGTCCGACACCTACACTGTGGAGGATGTCAACGACAAGAAGGAGTTTGAAGACACAATGAATGCCATGTCGGTGGTAGGCCTGTCAATGGATGCGCAGGACTCGGTGCTGCAGATCGTGGCAGGCATCCTCCATCTGGGCAACATCGCTTTCAGAGAGGAGGGCAACTATGCTGTGGTGGAGAGTGAAGACTTTTTGGCATTCCCATCATACCTGTTGGGGATCAATCAGGACGGTTTAAAGAGCAAACTGACCAGTCGTATCATGGACAGCAAGTGGGGTGGCAAGACGGAGACCATTTCTGTCACCTTAAACACGGAGCAGGCCTCCTTCACCAGAGACGCCCTGTCCAAAGCACTGTATTCAAGACTCTTCGACTATTTGGTTGATGCCATaaataaagcaatgcagaaaGACCGTGAAGAGCTGAACATTGGCGTTCTGGATATCTATGGCTTTGAAATATTTCAGAAAAATGGATTCGAGCAGTTCTGCATCAACTTTGTGAATGAAAAACTCCAACAGATTTTCATTGAGCTCACACTAAAAGCAGAGCAGGAAGAGTATGTACAAGAGGGAATCAGCTGGACCCCCATTGAGTACTTTAACAATAAAGTAGTATGTGATTTAATTGAGTCCAAACTGAATCCTCCTGGAATCATGAGCATCCTGGATGATGTTTGTGCAACCATGCATGCGAAAGGCGAGGGCGCTGACCAAACCCTTCTGCAAAAACTGCAGTCGCAAATCGGCACACATGAACACTTCAACAGCTGGAACAAAGGTTTTGTTGTGCACCACTATGCCGGCAAGGTGTCTTATGATGTGAGCGGCTTCTGTGAGAGAAACAGAGACGTGCTGTTCAGTGACATCATCGAGCTCATGCAGAGCAGCGAGTTTGCCTTTATTAAAGGTTTGTTCCCAGAGAACATTGAGGCTGAGAAAAGGGGTCGTCCCACTACTGCAGGTTCAAAGATTAAGAAACAGGCAAATACTTTGGTCCAGACGTTAATGAAATGCACCCCTCACTATATTCGATGCATCAAACCCAATGAAACCAAGAAGTCTCGCGACTGGGAGGAAAGTCGTGTAAAACACCAGGTGGAGTATCTGGGACTGCGAGAGAACATCCGTGTGCGCAGGGCCGGTTACGCCTTCAGACGCATCTTCAAAAAATTTCTGCATAGatatgccatcTTGACCAGAGAAACATGGCCTCAGTGGCGTGGAGATGAGAAACAGGGCGTCCTGCACCTTTTAAAATCTGTCAACATGGACTCAGATCAGTACCAGCTGGGCAAAACCAAAATCTTCATCAAGGCTCCAGAATCTTTGTTCCTGCTGGAGGAGATGAGGGAAAGAAAATACAATGGATATGCTCGGGTTATTCAGCAAGCCTGGCGCAAACACATTGCTGTACGGAAGTATGTCCGTATGCGAGAGGAAGCTTCTGACCTCCTGCTGAACAAGAAGGAGAGACGAAAGAACAGTCTGAACCGCAATTTCGTCGGAGATTACATCGGCACAGACAACCATCCGGAGATTCGGCAGTTTGTGGGTCGAAGGGAGAGAATTGACTTCGCTGATGTGGTGGTCAAATACGATCGCAGATTTAAGAGCGTCAAGCGGGACCTTATTCTCACCCCTAAGTTCCTCTATCTGATTGGACGCGAGAAGGTGAAGCAGGGTCCTGAGAAAGGCCAGATTCGTGAGGTCTTGAAGAGGAAGATCGAGGTGGAGAAGATCCAGTCGGTCTCTCTGAGCACACTACAGGATGACATCTTCATATTGCACGAGGATCAATATGACAGTGTTCTGCAGTCTGTCTTTAAGACTGAATTCCTCAGTCTGCTGTATAAGCGGTTTGAggaaaaaactaagaaaaagcTCCCGCTGAAGTTCAACAACCTACTTGAATTTAAGGTGAAGAAAGGAGGATGGGGTCCGTTTGCATCTGCTGGCTCTCGACAGATCCAGTTTCAGATGGGTCAAGGGGACGATGCTGTTCTGAAGCCCAGTAGCAAGATTCTAACTGTCAGTATTGGGTCTGGTCTGCCTAAAAACACAAGACCCACACGTCGGGACAACCGAAAGAGCAGCTTCATGGGCAACCAGAATCGCAGTGCAGGACAGTATTCACGGGAAGCTCCTAAGTCTGCTGGTCGAGGCAGAGGGCAGCCAGCCGTCAGACACTCTCTACTCCGCCAGCAGTCCACTATGGATCAGCCGACCCTTCCCAGACTCCAGGGATCCGTGCGCAGTCAGAGAGAGAGCCAGGTCTACACTGATATGGGCTTCATGAAGGTTCCTGATCAAGGCGTGGCCGGGATGCATCGCAGACGCTCAAAAGAGTACAAGCCTCTTCCAGGATCAGGACGTCCTAAACCCAGTCCCAAACCTGTACCCCGCACCCCACGGTGCAAAGCACTGTACGCTTACGATGCTCAGGACACGGATGAGCTCAGCTTTCAACCAGATGATATCATAGAAATCCTAAGTGAAGACCCTTCAGGTTGGTGGCAAGGTCGTCTTCGAGGAAAGGAAGGCATGTTTCCTGGCAACTATGTGGAGAAGATGTAAACTGGCATGCTATTGGACAAAATGTGATTCATAGCAGAAATTAGATCAAGAACAAAGCATCAGCTTTAAAACAGATCAAATCCCCCAGTGCGTGGAGGTTTTCTGCAGAAGATATATTAGCAGCTCTATTGAAAAAATACTTTTAGACCGACAAACCTATAGAAATTAAATGAGCttttatgtgatttatttttaatagaaagaaaTATTATGTAGAAGACCATTTATAATGCTGTTTCAATGTGTTACCTCTTAAAAAACACtagattattttaaatgtctttggaGAAAAGAATGAGtacataaacattttaatgtacTGTATTTTACTGAAGTTGTATTTTTAAAGATCCAATTTCTACTTTTTGTACCGATACTGTGCCATTGTGTAAATCAGAAAAGGCTGTTTTCATATACTCAGAAagacaaataaaacattatttgtttaattttacatta

Function

symbol description
myo1eb Predicted to enable actin filament binding activity and microfilament motor activity. Acts upstream of or within glomerular filtration and glomerulus development. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; microvillus; and vesicle. Is expressed in several structures, including EVL; ectoderm; epidermis; peripheral olfactory organ; and pharynx. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis 6. Orthologous to human MYO1E (myosin IE).

GO:

id name namespace
GO:0032835 glomerulus development biological_process
GO:0003094 glomerular filtration biological_process
GO:0007015 actin filament organization biological_process
GO:0030050 vesicle transport along actin filament biological_process
GO:0016459 myosin complex cellular_component
GO:0098858 actin-based cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005902 microvillus cellular_component
GO:0031982 vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000146 microfilament motor activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function
GO:0030898 actin-dependent ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1347 Predicted to enable actin filament binding activity and microfilament motor activity. Acts upstream of or within glomerular filtration and glomerulus development. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; microvillus; and vesicle. Is expressed in several structures, including EVL; ectoderm; epidermis; peripheral olfactory organ; and pharynx. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis 6. Orthologous to human MYO1E (myosin IE).

Ensembl:

ensembl_id ENSDARG00000009133

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020093 True 4020 mRNA 0.45 27 38201840 38238909

Neighbor

gene id symbol gene type direction distance location
XLOC_010125 pi4kb coding upstream 1317 38159758 ~ 38200523 (+)
XLOC_010124 selenbp1 coding upstream 44541 38138246 ~ 38157299 (+)
XLOC_010123 pogzb coding upstream 65170 38119004 ~ 38136670 (+)
XLOC_010122 CT025591.1 coding upstream 180706 38021019 ~ 38021134 (+)
XLOC_010121 cep162 coding upstream 257360 37891735 ~ 37944480 (+)
XLOC_010127 prune coding downstream 1118 38240027 ~ 38266885 (+)
XLOC_010128 bnipl coding downstream 38430 38277339 ~ 38299644 (+)
XLOC_010129 gabpb2b coding downstream 98874 38337783 ~ 38347556 (+)
XLOC_010130 elp6 coding downstream 111795 38350704 ~ 38359637 (+)
XLOC_010131 zgc:113232 coding downstream 121093 38360002 ~ 38389883 (+)
XLOC_010119 BX294107.1 non-coding upstream 430240 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 488203 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 541229 37659520 ~ 37660611 (+)
XLOC_010116 NA non-coding upstream 559977 37633447 ~ 37641863 (+)
XLOC_010134 NA non-coding downstream 492878 38731787 ~ 38733942 (+)
XLOC_010142 NA non-coding downstream 1385215 39624124 ~ 39627370 (+)
XLOC_010143 NA non-coding downstream 1388804 39627713 ~ 39628196 (+)
XLOC_010144 NA non-coding downstream 1392701 39631610 ~ 39632068 (+)
XLOC_010145 NA non-coding downstream 1618276 39857185 ~ 39901940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_02385791_02400026 MYO1EB coding CI01000016 null 2385791 ~ 2400452 (+)
bowfin (Amia calva) AMCG00012453 NA coding CM030138.1 CM030138.1 18445111 ~ 18466585 (+)