XLOC_010127 (prune)


Basic Information

Item Value
gene id XLOC_010127
gene name prune
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38240027 ~ 38266885 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020094
GCACAGCTCTGGATTCATAACTTGCACACAGTGAAGCGCTGAGGTCCTCTACACATTTCGGTACACTGAAGGGCATTTTTAAACTCTTTAGGATATTCCGCAACGTGAAACCCCTCGTGCTCCGTGTAACAATGGAGGCGTATTTACGGAGCTGTCGTGATGTGCTGAAGAGTTGTAGTAGGAACAGCCCAGGGCTGCATGTCGTAATGGGAAATGAGGCTTGTGATATGGACTCCATGGTATCAGCCCTGACCTTCGCCTACTTTCTTTCAAAGAGTCTTGATTGTAAGAGGATACCTGTGCCTGTGCTCAATATTCCACGCGCTGAGTTCCCTTTGCGGTCAGACAGCATCTTTCTGCTGAGAGAAAGCGGTCTGTCGCAGGACTACCTGCTGTTCAGGGATGAGGTGGATCTCCATGGCCTGCACAAGAACAAACAGCTGACATTGACACTGGTCGACCACAATGTCCTGCCCAGTGCTGACAGTGAGCTTGAGGACGCTGTTGTGGAAGTGATTGACCATCATCTCCTACAGAGACCCTCCTCCTCCTGCCCCATCACTGTGGAGCCTGTGGGCTCCTGCACAACCCTGGTGACTGAGCGCATTGCCCAGAAGTCACCCGCAGTGCTCGACCAACAAGTGGCTCAGCTTTTATACGGTACCATCATCCTGGACTGTGTTAACATGGCACCTGAAGCAGGTAAAGTCACCCCGAAGGACAGCCAGTACGCCATCTTTTTGGAGCAGCGTTTCCCAAAACTGCCTCCGCGGGGCGCTCTGTTTCAGTCTCTGCAGAATGCCAAGTTTGACGTGTCAGGCCTGTCCACAGAGCAGATGCTGCTGAAAGACATGAAAGCAGCGTCTGGTGGCGATCTGAGATTGGCTGTCAGTGTTATTTACATGACACTAGAGGATTTTCTTCAGAGAAGTGGCCTACAGCAGGACCTTTGCGAGTTCTGCCACAGTCACAACTATAATCTGCTGCTGGCCATGACAATCTCTTTTAAAGACAGCAAGGAGCCCTTCAGACAGCTGGCCGTCTACAGCTCCAGCACCGTCTACAGGGAAGAGATGAGTAAAGCACTAGAAAAAGCCAAAAACCCCAGTCTGGAGCTTAAGCCATTAAGCAGTCCATATCCAGATGTGAAGGCCTTTATTCAGGGTAACACACTGGCGTCTCGCAAAAAGGTGATGCCTATAATCACAGACTTCCTAAAGGAGAAGGAAAGGAGAGAAGCTCAGTGTATGAACATGGAGGATCTGGACCTGGACGATGATTCAAACCAGGACCAGAGTGACTGTCTGGAGGACGCTGGGATTGAGGACGACACTCGGGTTCCTCCAACGCCAATGAACAGTCTGGTGGAGGGCTGTCCCTTAGACAACGGCCTTCCCAAAATCAGCCCTGAAGCCTTGGTGGAGAAAGTCAGCAAGATGGCAAGCATGGAGGACACATCTCCTGAGGAGCAGTGATGAAGATGTGAATCTGGAGTAAGAGAAGGAAGCTCCTTCTGTGTCTTCATATACAGCAGTGGTGCATCAGGGAAATGGCACTGTTTTTAGATCTGGTGAACTCATAAAAGGTACGAGACTGTCTCCAAAGACCTTACTTTTGACCTTCTATTGACTGGTACGTGATGATTCAAACGGAGCATTACTTAGTTGCATCTCGTATAAGACAAGGTTTGGATTTGATAAAAGTAATTCCTATGGCATCTACAATTTGAACTTAATCTTATCTTAAATACTGCAGATAAGATGCACTCAATGCAAGCTAGCGACTGACAATTAATAGTACAAACGGATATGGATTATGAAAATATTCCACTAGTATGCAGTATGCACGTAATTATAACGTGGTAGCTATTTTTATTGTTGTAgcctgtaaaaaaacaaaaagatctgttaattaactgtttcttgtattttgtgattcgtgTTTTCGGATTTGCGTTATGGAGCATTGATTTCTACTACATAAACTTTTGATCGTGAaaattttgtttgaaaaaaatgactttcatttgatattttttgcggtggccgagagagcttagcGTGCTGCAATTTaggaaagcacatgcaattacaaaaaacaccagca
>TCONS_00020095
AACTTGCACACAGTGAAGCGCTGAGGTCCTCTACACATTTCGGTACACTGAAGGGCATTTTTAAACTCTTTAGGATATTCCGCAACGTGAAACCCCTCGTGCTCCGTGTAACAATGGAGGCGTATTTACGGAGCTGTCGTGATGTGCTGAAGAGTTGTAGTAGGAACAGCCCAGGGCTGCATGTCGTAATGGGAAATGAGGCTTGTGATATGGACTCCATGGTATCAGCCCTGACCTTCGCCTACTTTCTTTCAAAGGTATGTAACGCCCAACCTAATAAAGCATGTTTGCTGTGGTGTTATTGGAAAGATTGAAGATTATTGTCTGTCTGCTGTAGAGTCTTGATTGTAAGAGGATACCTGTGCCTGTGCTCAATATTCCACGCGCTGAGTTCCCTTTGCGGTCAGACAGCATCTTTCTGCTGAGAGAAAGCGGTCTGTCGCAGGACTACCTGCTGTTCAGGGATGAGGTGGATCTCCATGGCCTGCACAAGAACAAACAGCTGACATTGACACTGGTCGACCACAATGTCCTGCCCAGTGCTGACAGTGAGCTTGAGGACGCTGTTGTGGAAGTGATTGACCATCATCTCCTACAGAGACCCTCCTCCTCCTGCCCCATCACTGTGGAGCCTGTGGGCTCCTGCACAACCCTGGTGACTGAGCGCATTGCCCAGAAGTCACCCGCAGTGCTCGACCAACAAGTGGCTCAGCTTTTATACGGTGAGTGTTAT

Function

symbol description
prune Predicted to enable exopolyphosphatase activity. Predicted to be involved in polyphosphate catabolic process. Predicted to be active in cytoplasm. Orthologous to human PRUNE1 (prune exopolyphosphatase 1).

GO:

id name namespace
GO:0006798 polyphosphate catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016462 pyrophosphatase activity molecular_function
GO:0004309 exopolyphosphatase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism

ZFIN:

id description
ZDB-GENE-100609-1 Predicted to enable exopolyphosphatase activity. Predicted to be involved in polyphosphate catabolic process. Predicted to be active in cytoplasm. Orthologous to human PRUNE1 (prune exopolyphosphatase 1).

Ensembl:

ensembl_id ENSDARG00000076246

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020094 False 2106 mRNA 0.47 8 38240027 38266885
TCONS_00020095 True 733 lncRNA 0.50 3 38240045 38252100

Neighbor

gene id symbol gene type direction distance location
XLOC_010126 myo1eb coding upstream 1118 38201840 ~ 38238909 (+)
XLOC_010125 pi4kb coding upstream 39504 38159758 ~ 38200523 (+)
XLOC_010124 selenbp1 coding upstream 82728 38138246 ~ 38157299 (+)
XLOC_010123 pogzb coding upstream 103357 38119004 ~ 38136670 (+)
XLOC_010122 CT025591.1 coding upstream 218893 38021019 ~ 38021134 (+)
XLOC_010128 bnipl coding downstream 10454 38277339 ~ 38299644 (+)
XLOC_010129 gabpb2b coding downstream 70898 38337783 ~ 38347556 (+)
XLOC_010130 elp6 coding downstream 83819 38350704 ~ 38359637 (+)
XLOC_010131 zgc:113232 coding downstream 93117 38360002 ~ 38389883 (+)
XLOC_010132 cd83 coding downstream 127486 38394371 ~ 38397359 (+)
XLOC_010119 BX294107.1 non-coding upstream 468427 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 526390 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 579416 37659520 ~ 37660611 (+)
XLOC_010116 NA non-coding upstream 598164 37633447 ~ 37641863 (+)
XLOC_010134 NA non-coding downstream 464902 38731787 ~ 38733942 (+)
XLOC_010142 NA non-coding downstream 1357239 39624124 ~ 39627370 (+)
XLOC_010143 NA non-coding downstream 1360828 39627713 ~ 39628196 (+)
XLOC_010144 NA non-coding downstream 1364725 39631610 ~ 39632068 (+)
XLOC_010145 NA non-coding downstream 1590300 39857185 ~ 39901940 (+)

Expression


Co-expression Network