XLOC_010129 (gabpb2b)


Basic Information

Item Value
gene id XLOC_010129
gene name gabpb2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38337783 ~ 38347556 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020098
GTGCGCCATCTTTGACGAAAAATAGCCcatctttattatttttgtttttaaaaagtatagaAAAGTATGGTATAACACTTAACCGCATTAAACAACCGAAGCATACGTCTGGTCCTTTCCGTATCTAACGTGTTATAACACAGCAACCGTCTTCGGGAAGCCCAGCTGGCGAGATGTCACTTGTGGATTTGGGCAAGCGCTTGTTGGAAGCAGCTCGCAAAGGACAGGATGATGAAGTGAGGTCACTTATGGCCAATGGAGCTCCGTTTACCACAGACTGGCTGGGAACCTCACCGCTACATTTAGCAGCACAATATGGGCACTACTCGACCGCTGAGGTGCTTCTCCGTGCTGGCGTGAGTAGAGATGCCCGCACTAAAGTTGACCGCACACCACTCCACATGGCAGCAGCAGAGGGCCACTCAAGCATTGTTGAGTTACTGGTTAAGAGCGGAGCAGACATCAATGCCAAAGACATGCTGAAAATGACCGCCTTGCACTGGGCCACAGAACATGGGCACAGGGGAGTCGTGGAGCTGTTGGTCAAATACGGTGCAGATACTCACGCCCTCAGCAAGTTTGATAAGACTCCGTTTAACATTTCAGTGGACAGAGGAAACACTGATCTGATGCTCTTGctacagGAGGGAATGCAGAATCAAGTGAACATGAATCCAGAGAGGACTATCCTGAGCAGCACGTCGCCTGCCACCTCCAGCCCTCAGTTCATCATCTCCTCCTCTGGGGTGGTCAATCTTTCTGATATTGTTCTCAGCAATGCTAAGTCCAATACAGCTGCTTCAGAGAGTGTGATAGCTGCTGATTCAGTAGATTCTGCCATTCAGCATCTTGTAGGGGAAGATGGCCAGAGAGTTATCACTATAGTAACCGACCAACAGGGAAACCTGCAGCCTGGCAACTTGGGACATAAATTCTTTGTCACCATGCAGGGGCAGCAAATGGTTGCAGTGCCAGCAGGTCAGATTGCAGAAGAAATCGTAACTGAGGAGCCCAAACCAGTTCCATCACGAAAGCGGAAATTTGAATCAACGATGAACCACACAGATGTCAAGCATAAGGAGCCCGATGAGAAGGACAGTCGAGAAGTACTGGAACAGCAGCTAAAAGAAGCAAACAGAAAAGCGCAGGAGTACCGACAGCAGTTAATGCGGAAGGAACAGGAAGCTGAGCAGTACAGGCTGAAACTAGAAGCCATTGCCAATGGACAGACCAACGGCACAGAGCCCCAAGAGGAAGTAGTACTccaagaagaggaagaagaggaggaggtaGTTGGTGAAGAGGAAGTTGTCATGTTGCCAGAAGGCACCATCATCATTAAAGAGGAACCTCTGGATTCAACAACAGGAGAAACTGTGACATTAGTGGAGTCGACAGATATCACAGCCATTTCTGAGGACACGCCGTAACGGTGAACCCAAAGACTCAAACACTCAGGAATTACAAACACTCTTTTAGTCTGTGTGCCTGAAGTgtcatattgtatttatttattgtacatcataagcttttgtttttatcctttttttaCTCCTAGCGTTCAGTTTTTGTAAAAACCTCTACAAAAAAGTCGTAGCATTAATAATATTTAGGTGGCCACAATAATGCTGAGCTGCTCAGATTGGAAGAATATGAAGATGAAGCATGTCCCTTTAATGTACAGCAGTCATGTAggttttagaaataatattattcattatcctttggctcagtccctttattaatctggggtcgccacagcggaatcaaccgccaacttattcagcatatgttttacgcagaggatgaaATAATACTAATCAAGTCAAATTATACAACTCTAATGATAGTATGCAAGCATTTAAAGATCACCaaaaaattcattcatcc
>TCONS_00020099
atcgTTGTTCTCTGGTGACCTGAAGTGTCTCTTTTATCCTTATTTATGTCACTTGTGGATTTGGGCAAGCGCTTGTTGGAAGCAGCTCGCAAAGGACAGGATGATGAAGTGAGGTCACTTATGGCCAATGGAGCTCCGTTTACCACAGACTGGCTGGGAACCTCACCGCTACATTTAGCAGCACAATATGGGCACTACTCGACCGCTGAGGTGCTTCTCCGTGCTGGCGTGAGTAGAGATGCCCGCACTAAAGTTGACCGCACACCACTCCACATGGCAGCAGCAGAGGGCCACTCAAGCATTGTTGAGTTACTGGTTAAGAGCGGAGCAGACATCAATGCCAAAGACATGCTGAAAATGACCGCCTTGCACTGGGCCACAGAACATGGGCACAGGGGAGTCGTGGAGCTGTTGGTCAAATACGGTGCAGATACTCACGCCCTCAGCAAGTTTGATAAGACTCCGTTTAACATTTCAGTGGACAGAGGAAACACTGATCTGATGCTCTTGctacagGAGGGAATGCAGAATCAAGTGAACATGAATCCAGAGAGGACTATCCTGAGCAGCACGTCGCCTGCCACCTCCAGCCCTCAGTTCATCATCTCCTCCTCTGGGGTGGTCAATCTTTCTGATATTGTTCTCAGCAATGCTAAGTCCAATACAGCTGCTTCAGAGAGTGTGATAGCTGCTGATTCAGTAGATTCTGCCATTCAGCATCTTGTAGGGGAAGATGGCCAGAGAGTTATCACTATAGTAACCGACCAACAGGGAAACCTGCAGCCTGGCAACTTGGGACATAAATTCTTTGTCACCATGCAGGGGCAGCAAATGGTTGCAGTGCCAGCAGGTCAGATTGCAGAAGAAATCGTAACTGAGGAGCCCAAACCAGTTCCATCACGAAAGCGGAAATTTGAATCAACGATGAACCACACAGATGTCAAGCATAAGGAGCCCGATGAGAAGGACAGTCGAGAAGTACTGGAACAGCAGCTAAAAGAAGCAAACAGAAAAGCGCAGGAGTACCGACAGCAGTTAATGCGGAAGGAACAGGAAGCTGAGCAGTACAGGCTGAAACTAGAAGCCATTGCCAATGGACAGACCAACGGCACAGAGCCCCAAGAGGAAGTAGTACTccaagaagaggaagaagaggaggaggtaGTTGGTGAAGAGGAAGTTGTCATGTTGCCAGAAGGCACCATCATCATTAAAGAGGAACCTCTGGATTCAACAACAGGAGAAACTGTGACATTAGTGGAGTCGACAGATATCACAGCCATTTCTGAGGACACGCCGTAACGGTGAACCCAAAGACTCAAACACTCAGGAATTACAAACACTCTTTTAGTCTGTGTGCCTG
>TCONS_00020100
TTGTTCTCTGGTGACCTGAAGTGTCTCTTTTATCCTTATTTATGTCACTTGTGGATTTGGGCAAGCGCTTGTTGGAAGCAGCTCGCAAAGGACAGGATGATGAAGTGAGGTCACTTATGGCCAATGGAGCTCCGTTTACCACAGACTGGCTGGGAACCTCACCGCTACATTTAGCAGCACAATATGGGCACTACTCGACCGCTGAGGTGCTTCTCCGTGCTGGCGTGAGTAGAGATGCCCGCACTAAAGTTGACCGCACACCACTCCACATGGCAGCAGCAGAGGGCCACTCAAGCATTGTTGAGTTACTGGTTAAGAGCGGAGCAGACATCAATGCCAAAGACATGCTGAAAATGACCGCCTTGCACTGGGCCACAGAACATGGGCACAGGGGAGTCGTGGAGCTGTTGGTCAAATACGGTGCAGATACTCACGCCCTCAGCAAGTTTGATAAGACTCCGTTTAACATTTCAGTGGACAGAGGAAACACTGATCTGATGCTCTTGctacagGAGGGAATGCAGAATCAAGTGAACATGAATCCAGAGAGGACTATCCTGAGCAGCACGTCGCCTGCCACCTCCAGCCCTCAGTTCATCATCTCCTCCTCTGGGGTGGTCAATCTTTCTGATATTGTTCTCAGCAATGCTAAGTCCAATACAGCTGCTTCAGAGAGTGTGATAGCTGCTGATTCAGTAGATTCTGCCATTCAGCATCTTGTAGGGGAAGATG

Function

symbol description
gabpb2b Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human GABPB2 (GA binding protein transcription factor subunit beta 2).

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-136 Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human GABPB2 (GA binding protein transcription factor subunit beta 2).

Ensembl:

ensembl_id ENSDARG00000054344

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020098 False 1890 mRNA 0.45 8 38337783 38347556
TCONS_00020099 False 1363 mRNA 0.49 8 38338721 38347157
TCONS_00020100 True 732 mRNA 0.50 6 38338725 38343083

Neighbor

gene id symbol gene type direction distance location
XLOC_010128 bnipl coding upstream 38139 38277339 ~ 38299644 (+)
XLOC_010127 prune coding upstream 70898 38240027 ~ 38266885 (+)
XLOC_010126 myo1eb coding upstream 98874 38201840 ~ 38238909 (+)
XLOC_010125 pi4kb coding upstream 137260 38159758 ~ 38200523 (+)
XLOC_010124 selenbp1 coding upstream 180484 38138246 ~ 38157299 (+)
XLOC_010130 elp6 coding downstream 3148 38350704 ~ 38359637 (+)
XLOC_010131 zgc:113232 coding downstream 12446 38360002 ~ 38389883 (+)
XLOC_010132 cd83 coding downstream 46815 38394371 ~ 38397359 (+)
XLOC_010133 emc2 coding downstream 311919 38659475 ~ 38729606 (+)
XLOC_010134 NA coding downstream 384231 38731787 ~ 38733942 (+)
XLOC_010122 CT025591.1 non-coding upstream 316649 38021019 ~ 38021134 (+)
XLOC_010119 BX294107.1 non-coding upstream 566183 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 624146 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 677172 37659520 ~ 37660611 (+)
XLOC_010116 NA non-coding upstream 695920 37633447 ~ 37641863 (+)
XLOC_010142 NA non-coding downstream 1276568 39624124 ~ 39627370 (+)
XLOC_010143 NA non-coding downstream 1280157 39627713 ~ 39628196 (+)
XLOC_010144 NA non-coding downstream 1284054 39631610 ~ 39632068 (+)
XLOC_010145 NA non-coding downstream 1509629 39857185 ~ 39901940 (+)

Expression


Co-expression Network