XLOC_010131 (zgc:113232)


Basic Information

Item Value
gene id XLOC_010131
gene name zgc:113232
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38360002 ~ 38389883 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020104
GTGCAGGGGGACCAGCATCACACACAGGGCAGAAGAATGTTTTGACCACAGAAGCCCCTCATTGAAACGGTGCTGGCTGCATTCTCTGAAACCCCTAGACTGCACTTACCCAAGGAATCAGAGCTCTGTCCGGAAAGCAACCGTCTGGCAACCTGAGCAGGAGGCTGCTGGCCATGGGAGCCTCCAGGGTGAAGGTATGGACCGTGTCGCTCAGCTCTGTGTTCCTGCTGTGTGTTCTGCAATCTCACGCCCAGCAGGATTATTCAGGGTTACTTTCAGGAGAGCGCATGTATGAAGGCTCCATAGCTGAACGATATGATGAACATTCTGGATACAAATACAGAGTTGATTATCCTGCAGAGTCCAAACGCGGCAGTGAAGACGAGCTCTCAGCATCTGGATTTGACCCATACGCCCCTGCAGGCACCATGGTCACCATGATCACTGAAGAAACCTACCCATACTCCACAGGAGAGGAGTCTTTTGATTACGCCAAAGAGGACAAAACCTTGATGACACAGGTCCCATATGGAGGAGATGCTGAGTTGGGACAGGAGGGACCTACAGAATGTGACTGTGAACCAGGAGAGCCTGGATTTGGAGGCTTTGCGGGACCTAAGGGTTCAAGGGGTCTACAAGGGAAACAGGGCTTCCCTGGAGTTCAAGGAAGGGAGGGTTACAAAGGGACAAAAGGAGTGCGAGGAAGAGGCGGAGACACTGGTCCTGAGGGCGACTCTGGGCTTGATGGAGAGGATGGTGCATCTGGCTTCTTTGGTGCAATTGGCCTTCCCGGTTTGCCAGGTGACCCAGGTGAAACTGGACAACTTGGAGTGAAGGGTGATATCGGAATAGAAGGTCCTCGTGGAGGAGTCGGTCTCCATGGAAAGACTGGACCTGTTGGGCCAAAGGGTAAATCTGGAAAACTAGGAGGGAAAGGTGTTAAGGGTTCTGTCGGCAAAACAGGAAAACAGGGACCTGAGGGACGACAGGGACAGAAGGGACAGACAGGAGCACCTGGATTCTCAGGAGACCGTGGAGAGCAGGGTTACTTGGGTTATACGGGAGTTCCAGGAGACCGGGGGCGGACAGGACCAAAGGGAAGTAAAGGTACTGGTGGCTTACCAGGAAGTGACGGAGAGCCAGGAGAGGATGGCACTGTGGGTGTTCCAGGAGTTGTTGGGGTTCCAGGGGCTTTTGGACCTAAGGGTATGAAAGGGGATCGTGGTCTGAGGGGGCGAACTGGACGAGTAGGATCTGTGGGTCCACAAGGAGACAGTGGAGATGCAGGGATTTCAGGGAAACCCGGGCCAAAAGGCTTGCCTGGACCAACAGGTGCCAAAGGGGAAACAGGACCAGATGGTGAAAAGGGGTCACTGGGACGAAAAGGAGGAAAGGGTGCTAAAGGAGATAAGGGAGACGCTGGATCTCGTGGTGACAAAGGGCAGCATGGAGTGAAGGGCCGACTGGGCCGTGATGGACTTGCTGGTCCTATTGGACCTCCTGGTCTGCCTGGTCCCAGAGGAGATGAAGGCCCTCGAGGAGACCTGGGAGACAAAGGACAGAGCGGCCCAAAAGGAGAGCCAGGTGAAATTGGTCCGGGACTGACGGATGAGCAGATCCTGCAGCTTTGTCAAGGTGTGGTCATGGCTCAGATCTCCCAGTATGCTTCATCCATACGTGCCAAATGCGTTCAGGGCTGTCCCGTCAACAACCGTACCCTCATCGGACCCCCAGGAGGCACGGGGCCACGTGGAAGTCCAGGCAAAGCTGGTAAAGCAGGAAAGACGGGTGCTAAAGGTGAAAGAGGCCCTCAAGGCATCAAAGGAGTCGAGGGCCAAAAAGGAGCTCCAGGAGAAGCTGGTGCTAAAGGTCAGAAAGGACAGAGAGGTGATGCTGGCAAAGGTCTACCAGGACATGATGGTCACCAAGGCCTCAGAGGACTACCAGGCCATCCAGCAGAGCCTAAAGCTGGAATTGAGGGCCCACGTGGACCCCGAGGGTTTCCAGGACCTGTGGGTCAGACTGGAATGGCCGGCAGTGCAGGAATACCAGGAGTGTGTGAGGCACGTGACTGCAGCATTCATGCACCTGTAGTGCGCAAGGAGATGGGACTGGTCAAAGGCCCCGGCAGCCAGGCCTAACAAACACTAACCCGGGATAAGAAAATTGCGCTGTCGATGAAAGATGTCAGAGAACGACAGACTGGAGATCAAAGATACAGAAATTACCAGCACTTTCATCGCTTTTCACAATGTTTTGGTTTCACTACGAatacagtacagacatgtaaataattttgtaaagCATCCTAAATCCACATCTGCTGTGTCCTGAAAtagcctttgttttgtttttcttcactGAAAATGAACTAAATTATTTAGACAAAGCAGTTTTGTTCAGTAGCTTCAacatatttcttttcattttatccATCAAGAGTAAATAAAGAGATGTTTTTTGT
>TCONS_00020105
AGGGGGACCAGCATCACACACAGGGCAGAAGAATGTTTTGACCACAGAAGCCCCTCATTGAAACGGTGCTGGCTGCATTCTCTGAAACCCCTAGACTGCACTTACCCAAGGAATCAGAGCTCTGTCCGGAAAGCAACCGTCTGGCAACCTGAGCAGGAGGCTGCTGGCCATGGGAGCCTCCAGGGTGAAGGTATGGACCGTGTCGCTCAGCTCTGTGTTCCTGCTGTGTGTTCTGCAATCTCACGCCCAGCAGGATTATTCAGGGTTACTTTCAGGAGAGCGCATGTATGAAGGCTCCATAGCTGAACGATATGATGAACATTCTGGATACAAATACAGAGTTGATTATCCTGCAGAGTCCAAACGCGGCAGTGAAGACGAGCTCTCAGCATCTGGATTTGACCCATACGCCCCTGCAGGCACCATGGTCACCATGATCACTGAAGAAACCTACCCATACTCCACAGGAGAGGAGTCTTTTGATTACGCCAAAGAGGACAAAACCTTGATGACACAGGTCCCATATGGAGGAGATGCTGAGTTGGGACAGGAGGGACCTACAGAATGTGACTGTGAACCAGGAGAGCCTGGATTTGGAGGCTTTGCGGGACCTAAGGGTTCAAGGGGTCTACAAGGGAAACAGGGCTTCCCTGGAGTTCAAGGAAGGGAGGGTTACAAAGGGACAAAAGGAGTGCGAGGAAGAGGCGGAGACACTGGTCCTGAGGGCGACTCTGGGCTTGATGGAGAGGATGGTGCATCTGGCTTCTTTGGTGCAATTGGCCTTCCCGGTTTGCCAGGTGACCCAGGTGAAACTGGACAACTTGGAGTGAAGGGTGATATCGGAATAGAAGGTCCTCGTGGAGGAGTCGGTCTCCATGGAAAGACTGGACCTGTTGGGCCAAAGGGTAAATCTGGAAAACTAGGAGGGAAAGGTGTTAAGGGACAGACAGGAGCACCTGGATTCTCAGGAGACCGTGGAGAGCAGGGTTACTTGGGTTATACGGGAGTTCCAGGAGACCGGGGGCGGACAGGACCAAAGGGAAGTAAAGGTACTGGTGGCTTACCAGGAAGTGACGGAGAGCCAGGAGAGGATGGCACTGTGGGTGTTCCAGGAGTTGTTGGGGTTCCAGGGGCTTTTGGACCTAAGGGTATGAAAGGGGATCGTGGTCTGAGGGGGCGAACTGGACGAGTAGGATCTGTGGGTCCACAAGGAGACAGTGGAGATGCAGGGATTTCAGGGAAACCCGGGCCAAAAGGCTTGCCTGGACCAACAGGTGCCAAAGGGGAAACAGGACCAGATGGTGAAAAGGGGTCACTGGGACGAAAAGGAGGAAAGGGTGCTAAAGGAGATAAGGGAGACGCTGGATCTCGTGGTGACAAAGGGCAGCATGGAGTGAAGGGCCGACTGGGCCGTGATGGACTTGCTGGTCCTATTGGACCTCCTGGTCTGCCTGGTCCCAGAGGAGATGAAGGCCCTCGAGGAGACCTGGGAGACAAAGGACAGAGCGGCCCAAAAGGAGAGCCAGGTGAAATTGGTCCGGGACTGACGGATGAGCAGATCCTGCAGCTTTGTCAAGGTGTGGTCATGGCTCAGATCTCCCAGTATGCTTCATCCATACGTGCCAAATGCGTTCAGGGCTGTCCCGTCAACAACCGTACCCTCATCGGACCCCCAGGAGGCACGGGGCCACGTGGAAGTCCAGGCAAAGCTGGTAAAGCAGGAAAGACGGGTGCTAAAGGTGAAAGAGGCCCTCAAGGCATCAAAGGAGTCGAGGGCCAAAAAGGAGCTCCAGGAGAAGCTGGTGCTAAAGGTCAGAAAGGACAGAGAGGTGATGCTGGCAAAGGTCTACCAGGACATGATGGTCACCAAGGCCTCAGAGGACTACCAGGCCATCCAGCAGAGCCTAAAGCTGGAATTGAGGGCCCACGTGGACCCCGAGGGTTTCCAGGACCTGTGGGTCAGACTGGAATGGCCGGCAGTGCAGGAATACCAGGAGTGTGTGAGGCACGTGACTGCAGCATTCATGCACCTGTAGTGCGCAAGGAGATGGGACTGGTCAAAGGCCCCGGCAGCCAGGCCTAACAAACACTAACCCGGGATAAGAAAATTGCGCTGTCGATGAAAGATGTCAGAGAACGACAGACTGGAGATCAAAGATACAGAAATTACCAGCACTTTCATCGCTTTTCACAATGTTTTGGTTTCACTACGAatacagtacagacatgtaaataattttgtaaagCATCCTAAATCCACATCTGCTGTGTCCTGAAAtagcctttgttttgtttttcttcactGAAAATGAACTAAATTATTTAGACAAAGCAGTTTTGTTCAGTAGCTTCAacatatttcttttcattttatccATCAAGAGTAAATAAAGAGATGTTTTTTGTAAA

Function

symbol description
zgc:113232 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be part of collagen type IX trimer. Predicted to be active in basement membrane and extracellular space.

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005594 collagen type IX trimer cellular_component
GO:0005604 basement membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-86 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be part of collagen type IX trimer. Predicted to be active in basement membrane and extracellular space.

Ensembl:

ensembl_id ENSDARG00000040118

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020104 False 2464 mRNA 0.52 25 38360002 38389880
TCONS_00020105 True 2409 mRNA 0.52 24 38360006 38389883

Neighbor

gene id symbol gene type direction distance location
XLOC_010130 elp6 coding upstream 365 38350704 ~ 38359637 (+)
XLOC_010129 gabpb2b coding upstream 12446 38337783 ~ 38347556 (+)
XLOC_010128 bnipl coding upstream 60358 38277339 ~ 38299644 (+)
XLOC_010127 prune coding upstream 93117 38240027 ~ 38266885 (+)
XLOC_010126 myo1eb coding upstream 121093 38201840 ~ 38238909 (+)
XLOC_010132 cd83 coding downstream 4488 38394371 ~ 38397359 (+)
XLOC_010133 emc2 coding downstream 269592 38659475 ~ 38729606 (+)
XLOC_010134 NA coding downstream 341904 38731787 ~ 38733942 (+)
XLOC_010135 trhra coding downstream 428981 38818864 ~ 38826777 (+)
XLOC_010136 eny2 coding downstream 550875 38940758 ~ 38943685 (+)
XLOC_010122 CT025591.1 non-coding upstream 338868 38021019 ~ 38021134 (+)
XLOC_010119 BX294107.1 non-coding upstream 588402 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 646365 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 699391 37659520 ~ 37660611 (+)
XLOC_010116 NA non-coding upstream 718139 37633447 ~ 37641863 (+)
XLOC_010142 NA non-coding downstream 1234241 39624124 ~ 39627370 (+)
XLOC_010143 NA non-coding downstream 1237830 39627713 ~ 39628196 (+)
XLOC_010144 NA non-coding downstream 1241727 39631610 ~ 39632068 (+)
XLOC_010145 NA non-coding downstream 1467302 39857185 ~ 39901940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_01659416_01671969 NA coding CI01000016 null 1658974 ~ 1671969 (-)