G247960


Basic Information

Item Value
gene id G247960
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1303301 ~ 1330860 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281443
AGTTCTCCTCTGGCGAACAGTGCTTTGTTACGATTCAGATAGCTATCATAAGTCCGATGGGATCGCAACATTCAAAGTATTTATTCCAGTTCCATCCAACTGAGGATCGTATTCATCACGGCGGTATGGACGGTTGTTGAGGAACTGTGTCGTGGCTGTCGTGTCGATGAGGCCCTCACAGTGGATGATCTAGTTGACTCAATCTCTGCTGATACTTCAGGGCTGCGTTGTGGTCGTGTCAAGGCGCAGGTCCTTGGTCTCACCTGGATACGGCCCAGATCCGGTTGACTACGGTGAACCTCGGGATAACCAGAAAGACTAATATTAGCGTAGATGCCATTCTTCTTCTGATGTAACGAGTACATCAGGTGTTATAGGAAGTGTTCCCGGTTCCGGCTGACCTAATTTATGCAGCCTAATAATCCTTTAACAGATTTGAAAATATAAATTGGTAATGTGTTATGTGTATGCCAGGTTAAAGAAATGCGTTTTTAGTCTAGATTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281443 True 507 lncRNA 0.45 2 1303301 1330860

Neighbor

gene id symbol gene type direction distance location
CI01000058_01280337_01289153 DNASE2B coding upstream 13427 1278592 ~ 1289874 (+)
CI01000058_01266712_01271962 SAMD13 coding upstream 31249 1265753 ~ 1274437 (+)
CI01000058_01248234_01262911 PRKACBA, PRKACB coding upstream 39983 1248234 ~ 1263318 (+)
CI01000058_01239590_01240099 NA coding upstream 63001 1239502 ~ 1240300 (+)
CI01000058_00870909_00930600 ADGRL2A, ADGRL2 coding upstream 372701 870909 ~ 930600 (+)
CI01000058_01348684_01352173 NA coding downstream 17824 1348684 ~ 1352588 (+)
CI01000058_01364846_01374544 NA coding downstream 33986 1364846 ~ 1374584 (+)
CI01000058_01384467_01388274 NA coding downstream 53344 1384204 ~ 1388927 (+)
CI01000058_01391493_01394283 NA coding downstream 60633 1391493 ~ 1394419 (+)
CI01000058_01431719_01434294 CHIA.2 coding downstream 100699 1431559 ~ 1434513 (+)
G247917 NA non-coding upstream 54397 1221593 ~ 1248904 (+)
G247995 NA non-coding upstream 71455 1230210 ~ 1231846 (+)
G247910 NA non-coding upstream 93350 1201166 ~ 1209951 (+)
G248027 NA non-coding downstream 70128 1400988 ~ 1401268 (+)
G248031 NA non-coding downstream 72524 1403384 ~ 1403656 (+)
G248035 NA non-coding downstream 75796 1406656 ~ 1407006 (+)
G248036 NA non-coding downstream 78242 1409102 ~ 1409884 (+)
G247934 NA non-coding downstream 131423 1462283 ~ 1465887 (+)
CI01000058_00592498_00596709 NA other upstream 706130 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 847557 434913 ~ 455744 (+)
G247940 NA other downstream 122137 1452997 ~ 1456447 (+)
CI01000058_01794468_01800421 KISS1 other downstream 464853 1794468 ~ 1800421 (+)
G250039 NA other downstream 3363548 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3495516 4864571 ~ 4888216 (+)

Expression


Co-expression Network