XLOC_010133 (emc2)


Basic Information

Item Value
gene id XLOC_010133
gene name emc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38659475 ~ 38729606 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020108
ACCCTTCTCACAGCGTTGACTGTCAACGTCACTGCCCTCCACCAATCCGTTCACAAGGGGCGGAGCTCAAAAAACATGTCGTCCATATCGGAGCTGTACGATGTCACTTGGGAAGAGATGCGTGACAAACTCCGTAAGTGGAGGGAAGAGAATTACAGGAACAGTGAGCAGATTGTGGATGTCGGTGAAGAGCTGATTAATGAGCATGCGTCTAAACTGGGAGATGACATTTGGATAATTTACGAGCAGGTGATGATCGCCGCGCTGGACTGCAGTCGTGATGATCTGGCCTGGAGTTGCCTACAGGAGCTGAAGAGGCAGTTTCCAGACAGTCACAGAGTGAAGCGATTAGCAGGGATGCGGCTGGAGGCTCTGGAGAGGTATGACGATGCCAATAAGCTGTACGACTCAATACTACAGGACGACCCAACTAATACGGCAGCGAGGAAGCGCAAGATCTGCATCCTCCGAGCGCAGGGCAAAAGCAGCGAGGCCATCCGCGAACTCAACGAATATCTGGAGCAGTTTGTGGGAGACCAGGAAGCCTGGCATGAGCTGTCCGAACTCTACATCAATGAGCATGATTATGCAAAAGCAGCTTTTTGTCTTGAAGAGCTGATGATGACAAACCCACACAATCACCTGTATTGCGAACAGTACGCAGAGGTGAAATACACGCAGGGAGGTCTGGAAAACCTCGAGCTGGCCAGGAAGTATTTCGCACAGGCACTGAAGCTTAACAACAGAAACATGAGGGCCTTGTTCGGCCTTTACATGTCGGCAAGTCACATCGCTGCCAGCCCTAAAGTCAGCGCAAAGGTGAAGAAGGACAATGTGAAGTACGCAGCATGGGCCGCCGCTCAGATCAGCCGAGCCTATCAGATGGCCGGCCGTGGGAAGAAGGAGAACAAATGCTCGGTGAAGGCGGTGGAGGAAATGTTGGAGTCCCTGCAGATCACCATGTCTTAAACCTCAGCTCTGCCTCCCTCCTTCCTCCAACCTCTGTCACCACAACACCATGGCAGCTCTCCCTGCTCACTAGAGTCCACCACTACCACCACCCACAGACCAGACCACCCAACCCAACATTTCAGTATCAGTTCATCCTCCTTTATATTGTTTCGAGTTCTTCTGGTAGGCTTCAGACACCCAAACCATTCCACACTTGAGTTCTTGAGTCAGCCACAAGCActtctatatttattattattatttagagctTATCAGTGGGTCACTTGGTGGAATCAGATTGGTCTGCGATGGAAAAGTGAGCGTAAAAAGGATAATCCAGCTAATGTTTCTAGATCGAGTTCTAGATGgagtttttgtagtttaaaaggGTTTGGTTAGAGAGTAAATGGAAATGAGATGATGGAAATGTGCTAACTGTACATGCAACAAAAAATCTGATGTCATGGCGTATCTGTTTTTTCTTAGCAAAATAAAGGACTGCATTTTTTGACTAACAATATTAA

Function

symbol description
emc2 Predicted to contribute to membrane insertase activity. Predicted to be involved in protein insertion into ER membrane by stop-transfer membrane-anchor sequence and tail-anchored membrane protein insertion into ER membrane. Predicted to be located in endoplasmic reticulum membrane. Predicted to be extrinsic component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Orthologous to human EMC2 (ER membrane protein complex subunit 2).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040625-82 Predicted to contribute to membrane insertase activity. Predicted to be involved in protein insertion into ER membrane by stop-transfer membrane-anchor sequence and tail-anchored membrane protein insertion into ER membrane. Predicted to be located in endoplasmic reticulum membrane. Predicted to be extrinsic component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Orthologous to human EMC2 (ER membrane protein complex subunit 2).

Ensembl:

ensembl_id ENSDARG00000003308

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020108 True 1475 mRNA 0.48 11 38659475 38729606

Neighbor

gene id symbol gene type direction distance location
XLOC_010132 cd83 coding upstream 262116 38394371 ~ 38397359 (+)
XLOC_010131 zgc:113232 coding upstream 269592 38360002 ~ 38389883 (+)
XLOC_010130 elp6 coding upstream 299838 38350704 ~ 38359637 (+)
XLOC_010129 gabpb2b coding upstream 311919 38337783 ~ 38347556 (+)
XLOC_010128 bnipl coding upstream 359831 38277339 ~ 38299644 (+)
XLOC_010134 NA coding downstream 2181 38731787 ~ 38733942 (+)
XLOC_010135 trhra coding downstream 89258 38818864 ~ 38826777 (+)
XLOC_010136 eny2 coding downstream 211152 38940758 ~ 38943685 (+)
XLOC_010137 sybu coding downstream 417090 39146696 ~ 39168840 (+)
XLOC_010138 zdhhc3a coding downstream 467121 39196727 ~ 39233451 (+)
XLOC_010122 CT025591.1 non-coding upstream 638341 38021019 ~ 38021134 (+)
XLOC_010119 BX294107.1 non-coding upstream 887875 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 945838 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 998864 37659520 ~ 37660611 (+)
XLOC_010116 NA non-coding upstream 1017612 37633447 ~ 37641863 (+)
XLOC_010142 NA non-coding downstream 894518 39624124 ~ 39627370 (+)
XLOC_010143 NA non-coding downstream 898107 39627713 ~ 39628196 (+)
XLOC_010144 NA non-coding downstream 902004 39631610 ~ 39632068 (+)
XLOC_010145 NA non-coding downstream 1127579 39857185 ~ 39901940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_01476991_01494147 NA coding CI01000016 null 1476837 ~ 1494994 (-)
eurasian perch (Perca fluviatilis) G92355 NA non-coding NC_053120.1 CM020917.1 1008675 ~ 1009506 (-)
mexican tetra (Astyanax mexicanus) G92489 emc2,LOC107600623,LOC107666844,LOC107679651 non-coding NC_035906.1 CM008309.1 21406031 ~ 21446986 (+)