G247940


Basic Information

Item Value
gene id G247940
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1452997 ~ 1456447 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281423
CTACATGAATAATGTCTTTTATTGATCCCATTCTGTTTTGAATGCAAAATGAATGTAACCAGAATCTTTTTTGGTGGTTGCATGTTGTTTATTCATATGAGGTTTCATTTTTTTTTCTTTAAAGTGCATTTTTACTCACTAGTAATATTAACAGATTTACAGACTGAGTTATTCAAAAAGAAGCAACAAAAACAAGCATTATACACTAATAAAATACACTCAAATGGAAAGATACAGCACAAGGAATTATGTTCAGTCTACACAAATTTCCTTTATATAAAATAGTTGTAGTCATAGATGTTTAGTTTGGATTCATTTGTGTGCTTAAGCATATTTGCAGTGTCCTGTTTCACTTTTCGTATATGTTTTTTCACATTAATGGTCCCTTAGTGTTTAGGCCAGCCACAGCATTTACAGCTATCATCAAACACAGTGCCTGGGCCACAGTTATCGATGTAAGTAGTGCCTGCTGCACAGTTATAATATTTGTTGGGGTCTTCAGGGTGAGGATAGAGTCCATCTGGCATCCCGTTACAGAATCCTGGTCCTGGAGCATGAGTGGTGGTGGTGGTAGTTGTGGTAGTTGTGGTGGTTTTTAAGGTTGTTTGTCCAGGTTTGAGGGTGGTGGTTGCAGGCAGAGGAGTGTGAATCTTTGTTTGTCTTCAGGTGGACTTCCTCTTGATCCAGGATATTCCCAGTCCAAGTCCATACCATCAAATCCATAAGTTCTCAGGAATTTGATGGAAGACTGAATGAACTTTTGACGGTTTTCTGCACTGGACACCATGATGGAGAACCTGAAATGAATTTAAGGAACAATATTTTTGCATTTCATTTGACTAATTTCACACGATAAAACAAAACTTCATAATTTTTACAGAATACTTACTGTGATGAACCAAAGTTCCATCCACCAACAGCCAAGAGAGTTACAAGATGGGGATTTCTGTTTTGAGTTCATTGAAAGCCTTGTAAAGAGTCTCATCGTTCCACTCATATGTGACAAGCTCGTTGGCATGGTTGATCATTGCGAATGCATAGAGAAGGTGTGTACAAAGGAAAGGGTCGACATTTGCAGGTGTATACTTTCCAATTCCAGGTCTGTACTGGGACCAGTTGGTGAAGTAGCAGCCCATTTCCATGGAGAAAGCTGGTTATGGATATACAAAGAGACAAGATATTTACGCATTCTCCCTGCAGTGATAATTGTCTTTAATTTGTCATTAAAATGAATGTGAAATGATTACATGATGCAATAAATACTCATTGACTCACCAACATGGCAGAGCACCAATCCCAAACCTAGAATATGCAATGATATTATATAAATGACAAATTTAAAAGAATGAATAAAACTCACATAGTGTAGTGTATATTATTTTGACATATTACCTGCTACAAGTGTAAGCTTCCCCATTTTTATTCCGATTTTTTTCTGTAAGTAACAAAGAAGAGTTTTTCAAATGACATTTAAACTAATAGCAAAAGTAAAGATATTAAGCTGAATGACATTCTGACATACCTGGGGTAACTCAAGCTTGAAAAATGTAAAGAGGAACTTCAGGACTCCTGCTTTTTATAGGAATCAGATGTTCTCTAGGCCCATTTAGGATGTTTTATTAGGATAGTGTAAGATATCGTATCACCTGTAAACTATGGACTGAAATGACAATAAAATATGTAACTGAAATACCTTTGGCCTAAAATCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU281423 True 1710 TUCP 0.36 3 1452997 1456447

Neighbor

gene id symbol gene type direction distance location
CI01000058_01431719_01434294 CHIA.2 coding upstream 18484 1431559 ~ 1434513 (+)
CI01000058_01391493_01394283 NA coding upstream 58578 1391493 ~ 1394419 (+)
CI01000058_01384467_01388274 NA coding upstream 64070 1384204 ~ 1388927 (+)
CI01000058_01364846_01374544 NA coding upstream 78413 1364846 ~ 1374584 (+)
CI01000058_01348684_01352173 NA coding upstream 100409 1348684 ~ 1352588 (+)
CI01000058_01496481_01498802 NA coding downstream 38423 1494870 ~ 1499810 (+)
CI01000058_01580247_01591754 NA coding downstream 123216 1579663 ~ 1592253 (+)
CI01000058_01625351_01664692 PIK3C2B coding downstream 168904 1625351 ~ 1665794 (+)
CI01000058_01740599_01784355 PLEKHA6 coding downstream 284152 1740599 ~ 1784676 (+)
CI01000058_01794468_01800421 KISS1 coding downstream 338021 1794468 ~ 1800421 (+)
G248036 NA non-coding upstream 43113 1409102 ~ 1409884 (+)
G248035 NA non-coding upstream 45991 1406656 ~ 1407006 (+)
G248031 NA non-coding upstream 49341 1403384 ~ 1403656 (+)
G248027 NA non-coding upstream 51729 1400988 ~ 1401268 (+)
G247960 NA non-coding upstream 122137 1303301 ~ 1330860 (+)
G247934 NA non-coding downstream 5836 1462283 ~ 1465887 (+)
G248052 NA non-coding downstream 11190 1467637 ~ 1503560 (+)
G247993 NA non-coding downstream 35732 1492179 ~ 1550850 (+)
G248103 NA non-coding downstream 160129 1616576 ~ 1617014 (+)
G248104 NA non-coding downstream 160904 1617351 ~ 1617920 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 164727 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 855826 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 997253 434913 ~ 455744 (+)
G250039 NA other downstream 3237961 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3369929 4864571 ~ 4888216 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location