G247934


Basic Information

Item Value
gene id G247934
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1462283 ~ 1465887 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281417
AGAAGAGTTAATAAGTCAGATTGCTATAAATATTTTTATTGAAAATTAAAGCAAAAAGTGGACACCGCACAACAAGAGAAAACTATACTGTATTGAACAGGATATTATGTAAAATTTGAGTAAAAATATGACCATGACAACTCCATACAGCTATGCATACATTTTTTTTTTTTTCAAATGATGAGCATTAGATAGTTGAAATAAGAGGTACATCACAACAATAGGAGACTCCTGAACAGCTTTATTGAACAGGAAGAGCAGATCTGAATTTGCGCTCAAGGCCAATCACAACATTTACAAGCATCAACAAAGACCAGACCAGTCTGGCATTTCTGCAGGTATGTGTTTCCACGGAAACATTGGAAGTAAGTGGTCTCGTCAGTAGGGTTGGGGTACAGCCCATCTGGTTTACCAGCACAGAAAGAGGTGATGGGGTCAGCGGTCGTGGTGGGACGTGGTGTAGTGGTGGGCTTGGGTGGGAAACCTTTGAAAAGAGATTTAGCATCACATTAAAACATATAACAGAAGACAGAATACATGTTATACTCTTTATGGTTTAAAGTTTTTACCAAGTGAGTTGCGCAAATGGTTGACAAGAGGGTAAGCTCCATTGTAACAGAAGCGGCCAGCAAAATCATCTAAATCCAAAGTCCACACTGAGGCTCCGCCCAAGTTTAAGGAGTTAAGGTATTGTACCTGTTAAAGCAAATATTAAGAAAAATTTGTTGGAAGTTCACCAAACATCACATTGCCTTAAATTCTGGAAAACAGCAGTTGATTTACCTTAGCTGTAAAGCTTTCATGGTTGTCAAATCCGACCCAAGCCTTTCCTTGAACTGCATAGGGCACCTTCTGCTCATCGATCCAGTTAATAGTGACACTTGATTCCATGGGACAAATCTGTGAACCAAACAACACTCTTTATCTTTTGTCTCCCAAAGTTTACATAGATTGTGCCATTCACAGTGTGTTTTCAGTGGTAAATTACTGGCTGCCGAGAGCATAAAATATTTACAATTCAAGACACATTTAGAAACCAAACACTCATATTGCTAGTAACTTTTTCTATTTCTGCTACATCAATGGAAATAGTTAAAAAAGCACACACAGCACAGTCGCTGAGTAACAAAGTAATGGTGTTTTTGAACGAATTGGTTTAGCGACTGATTCAACGACTTATAAAGAAAATCACTTGTTTTGTTTCTAAAAAAATTAGTGTTCTTAAACAAATTGTTTGAATGAATGATTCAATGACTCTGAATGAGTCACTGAATCATTAGTTCAAACAATTTTGAATAGTCACTTGTCGCCACCTGCTGGTGTATCAATGCAACCTGCAGAAAGAGTCACTAAAGGGCCAGAACTAACGGTTGTGTAATAACCATTTGACCTTGATAGTAGTTATTCACTTAAAAATATATATTTGTATACAAAATAATATAAAACGTATTAAGTTTACAAACTGGTGGTGAATTTAGTGCCACTTAAAGTAAGTAACAAAGTATTTTTCTGAAGTAAACCCAGTTGAGAATACTTGTTTTAGATCAAAGTTAAAAGTAGCATGTTGAAACCTCATAATAGGACCAAAAGCCTTCTTCGCGTGTGTAGGGGCCGGCATCAGCAGGGCCACTGGCTGGGGCCCCGAGACCTGTTTGTGAAGTAGAGAGCAAGAATGTGCGTCCATATGTGGGGAAGCCAAGAAGCAGCCTGTCAGCATGGGCTCCACCGCTGAGCCAGAAAGCCACAGAGGAGTTCTAATTAATAGAAAAACAAATGTGTTAAGAGATCTCAGATTACATATGATGGATTTTTAATTGATGGGTTTTGAGCTTACAATATTGTGGTGAATGATGCTTCCACTGTCAATGGAGCTGCGGAAAAGTGGGCTGTTGTGCCCTGTCTTGGGATCCCAGTGGCCATGGTAGTCATACGACATGATGCTCAAGAAGTCCAACAAACTGTAATGACAGAAAGAAGGAGAAAGTAAAACATTTTTCATAGATGGATGTTATTGCAGTTTGATGAAACTACCAAACTTACCCTGAAATTTCAGCGATCTCATAAGCTTTTTCAATAGTGGACTTGATGCCGGACACTTTGGATGAGAGCAACAGAGGAGTTTTCTTAGTGTCTATGGCCTCCTGTTCAACAGCTGCTCTCAGTTCCTGATGAATGTAGTAAACCTCTCCTTGTCATCTGATGGGCTGCCATTGTGACCAGGGTACTGCCAGTCAATGTCCATACCGTCAAATTCATGTTGACGCAGGAACAACAATGCTGAACTGATGAAAGCCTTGCGGTTCTCTGGAGTTGCCACCACATTAATGTACCTGAATTGCAAAGAGAGACATACAGTACAAAATATCTGAAGAACTAAAACATTTCAATTTATTAAATAATATTAAAATTATTGTTTTATTGGAATGAATTAAAAAAAATATTCTGCTCATATAATTATTATTTTGTGTATTTTAATTCATATTATAGTGTTAGGTCATATTATTTATGACTTGCATAGATGTATATTGTTTTCCACTTACGGACTGACGCCATTGACCAATCCTCCAACAGACAGCAAGGTCTTCAATGCAGGATTACTCTTTTCAGGTCATTGAGTGACTTGTACAGCACTTCATCATTCCATTCGACGGTCGTGATTTCATTAGTGTTGGTGATGCTTGCCAGAGCGTAGATCACATGAGTGCAGAGGAACGGATCAATGTTGTCTGGTGTGAACTTCCCATTGCCAGGTCTGTACTGGGACCAGTTGGTCATGTAGCACACCAGCTTTGTAGAGGCCACTATCAGAAATTATGATATTATTAACAGCTCACAGTCATATTTGTTGTTATAAGGGTGATTGGGAATATTTATTATGAAAGATTATGCATTAATTTATAGGCTATATGTTTGACATAGATATTTGGGGTAGTGAAAAAGTTATTAAAGGTCCTTACCAATCTGTAATGTAAGCAAGATGCCCAGTCCTATGCAAAAGACAACATGATTATGCATAAGAAATAAACTAGCATATTATTTATAGTAAATAAATATTTTTACAAATCAAATTAAAATTAAATGAATTTTAATATATATGCAACATACCTGCTAAAAGAGTTAATTTAGCCATTTTGGTCTTAATCCAAATCCAAACCAGTATTATTCAGAAACAGAGCTGTAAAACCCAACAAATAAATCAAATTGCATTAGCATGTTGAGTTTTGCCATAGTGTGTGCATATAAATATTATTTATAAAGAGATGAATAAAACATAGGAAAGCTGGTCTCTTTACCTGTGTCAGCTGCACTGAGAATGGGCAGTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281417 True 3326 lncRNA 0.37 4 1462283 1465887

Neighbor

gene id symbol gene type direction distance location
CI01000058_01431719_01434294 CHIA.2 coding upstream 27770 1431559 ~ 1434513 (+)
CI01000058_01391493_01394283 NA coding upstream 67864 1391493 ~ 1394419 (+)
CI01000058_01384467_01388274 NA coding upstream 73356 1384204 ~ 1388927 (+)
CI01000058_01364846_01374544 NA coding upstream 87699 1364846 ~ 1374584 (+)
CI01000058_01348684_01352173 NA coding upstream 109695 1348684 ~ 1352588 (+)
CI01000058_01496481_01498802 NA coding downstream 28983 1494870 ~ 1499810 (+)
CI01000058_01580247_01591754 NA coding downstream 113776 1579663 ~ 1592253 (+)
CI01000058_01625351_01664692 PIK3C2B coding downstream 159464 1625351 ~ 1665794 (+)
CI01000058_01740599_01784355 PLEKHA6 coding downstream 274712 1740599 ~ 1784676 (+)
CI01000058_01794468_01800421 KISS1 coding downstream 328581 1794468 ~ 1800421 (+)
G248036 NA non-coding upstream 52399 1409102 ~ 1409884 (+)
G248035 NA non-coding upstream 55277 1406656 ~ 1407006 (+)
G248031 NA non-coding upstream 58627 1403384 ~ 1403656 (+)
G248027 NA non-coding upstream 61015 1400988 ~ 1401268 (+)
G247960 NA non-coding upstream 131423 1303301 ~ 1330860 (+)
G248052 NA non-coding downstream 1750 1467637 ~ 1503560 (+)
G247993 NA non-coding downstream 26292 1492179 ~ 1550850 (+)
G248103 NA non-coding downstream 150689 1616576 ~ 1617014 (+)
G248104 NA non-coding downstream 151464 1617351 ~ 1617920 (+)
G248112 NA non-coding downstream 210970 1676857 ~ 1677153 (+)
G247940 NA other upstream 5836 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 174013 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 865112 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1006539 434913 ~ 455744 (+)
G250039 NA other downstream 3228521 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3360489 4864571 ~ 4888216 (+)

Expression


Co-expression Network