G247993


Basic Information

Item Value
gene id G247993
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1492179 ~ 1550850 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281476
CTTGTATGGACCAGTCTCCTTTAAGACCACCTGGGATAACATCAGGAGCTGAAACAAATCATTATATGCACCCAGGTGAGTCTGACACTACGTGCTGAAGGGTCCGAGAGCTCAAGATCCTGAGGAGGGTCGGGTCGACCTGGAAGAGAACAGTATACTAAATTAGCCATGTTAACTTACAACAGCACTAATTATTCTCAGAGGTTAAAAAACAGATTGATTGTTAGAGGCTTTAATTGGACATTAGAAATAACTGTCCTAGATATGTTACCTGCAGAGGCACTACGATTTGAGGCAGAAGAGATGTCATCCTCTATGAGGTAAAGGTCAAAGGTCAG

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281476 True 338 lncRNA 0.43 3 1492179 1550850

Neighbor

gene id symbol gene type direction distance location
CI01000058_01431719_01434294 CHIA.2 coding upstream 57666 1431559 ~ 1434513 (+)
CI01000058_01391493_01394283 NA coding upstream 97760 1391493 ~ 1394419 (+)
CI01000058_01384467_01388274 NA coding upstream 103252 1384204 ~ 1388927 (+)
CI01000058_01364846_01374544 NA coding upstream 117595 1364846 ~ 1374584 (+)
CI01000058_01348684_01352173 NA coding upstream 139591 1348684 ~ 1352588 (+)
CI01000058_01580247_01591754 NA coding downstream 28813 1579663 ~ 1592253 (+)
CI01000058_01625351_01664692 PIK3C2B coding downstream 74501 1625351 ~ 1665794 (+)
CI01000058_01740599_01784355 PLEKHA6 coding downstream 189749 1740599 ~ 1784676 (+)
CI01000058_01794468_01800421 KISS1 coding downstream 243618 1794468 ~ 1800421 (+)
CI01000058_01838039_01842964 NA coding downstream 287189 1838039 ~ 1843230 (+)
G247934 NA non-coding upstream 26292 1462283 ~ 1465887 (+)
G248036 NA non-coding upstream 82295 1409102 ~ 1409884 (+)
G248035 NA non-coding upstream 85173 1406656 ~ 1407006 (+)
G248031 NA non-coding upstream 88523 1403384 ~ 1403656 (+)
G248027 NA non-coding upstream 90911 1400988 ~ 1401268 (+)
G248103 NA non-coding downstream 65726 1616576 ~ 1617014 (+)
G248104 NA non-coding downstream 66501 1617351 ~ 1617920 (+)
G248112 NA non-coding downstream 126007 1676857 ~ 1677153 (+)
G247948 NA non-coding downstream 135929 1686779 ~ 1706383 (+)
G247947 NA non-coding downstream 163434 1714284 ~ 1733492 (+)
G247940 NA other upstream 35732 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 203909 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 895008 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1036435 434913 ~ 455744 (+)
G250039 NA other downstream 3143558 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 3275526 4864571 ~ 4888216 (+)

Expression


Co-expression Network