XLOC_010135 (trhra)


Basic Information

Item Value
gene id XLOC_010135
gene name trhra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38818864 ~ 38826777 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020109
ATGGAGAATGATCTCCGAAACGGCACTTTCAGCAACGGGACTTGGACTGATAACAGTGTCGAATACAAGGTGGTGAGCATCCTATTAGTGATCCTTATTTGTGGAGTTGGAATTGTTGGGAATGTTATGGTCATTCTTGTGGTCTTGACGACCAAGCACATGCGTACCCCGACTAACTGTTACTTGGTGAGCCTAGCAGTTGCCGATCTCATGGTTTTAACCGCAGCCGGGCTGCCCAACATCACCGAGATCCTGTTCGGCGGTCAGTGGGTGTACGGCTACGCCGGGTGCCTCTCCATCACTTATTTCCAGTATCTGGGCATCAACGCGTCCTCCTGCTCCATCACAGCCTTCACCATCGAACGCTACATAGCAATTTGCCACCCGATAAAAGCGCAGTTCATGTGCACCCTCTCCAGAGCCAAGAAAATCATTGTGCTCGTCTGGGTCTTGACGTCCCTCTATTGCGTTATGTGGTTTTATCTGCTGGACACGAGGGAGAAAGTTTATGATAACGCTGTTCTTGTGACGTGCGGCTATAAAGTGTCCAGAGAACTGTATTTGCctatttattttacagattacGCGGTGTTCTACGTTATCCCGCTCTTGTTAGCCACTGTTTTATACGGGTTGATCGCAAGAATCCTTTTCCTCAACCCACTCCCGTCGGATCCCAAGGAAAGTCGAAGAAATTGGAAGAAGGAGTCGTCTGTGCACGGGAACTCCAGGAGTTCATCCAACAGCACGACTGTGGCTTCTCGGAGACAGGTGACGAAGATGCTGGCGGTGGTGGTGATCCTCTTCGCTCTGCTCTGGATGCCATACCGGACGTTAGTGGTGGTCAACTCCTTCCTCAAGGAAGCCTATCTGGACACCTGTTTCCTTCTGTTCTGCCGTCTCTGCATCTACATGAACAGCGCCATCAACCCCATCATCTACAACGCCATGTCACAGAAGTTTCGCGCCGCCTTCCACAAACTATGCCACTGCAGGCCTCAGCGCTCAGAAAAGCCCCCGGCGTACAGCGTGGCCCTCACATACAGCGTCATCAAGGAGACATCCAACGGAGAGAGTCCAGACCACTACACCACTGAGCTGGACGACATCCGGGGGGCCGCAGAAGATCTGCTGCCCGAGCGGAAGAGGCTGTGCTTTAAAGAGCCTGCTAAAGACACACTGGCAACAGCTTGA
>TCONS_00020110
GCTTTAATTTTCATCTCTGAAATCTGAAGCCTGCGGGCGAATGGTGCTTAATTACAGAAGAACTTAATTTTGAACTTTACGGATTTTTCTTGCGTTGGAATACTGAAACATGACCTTTCTGCGCGCGTCCTGAGAAGTGATTTTTGCGCAATAAGAATCACAAAGAAGCGGAGCATGGAGAACGGCACTTTCAGCAACGGGACTTGGACTGATAACAGTGTCGAATACAAGGTGGTGAGCATCCTATTAGTGATCCTTATTTGTGGAGTTGGAATTGTTGGGAATGTTATGGTCATTCTTGTGGTCTTGACGACCAAGCACATGCGTACCCCGACTAACTGTTACTTGGTGAGCCTAGCAGTTGCCGATCTCATGGTTTTAACCGCAGCCGGGCTGCCCAACATCACCGAGATCCTGTTCGGCGGTCAGTGGGTGTACGGCTACGCCGGGTGCCTCTCCATCACTTATTTCCAGTATCTGGGCATCAACGCGTCCTCCTGCTCCATCACAGCCTTCACCATCGAACGCTACATAGCAATTTGCCACCCGATAAAAGCGCAGTTCATGTGCACCCTCTCCAGAGCCAAGAAAATCATTGTGCTCGTCTGGGTCTTGACGTCCCTCTATTGCGTTATGTGGTTTTATCTGCTGGACACGAGGGAGAAAGTTTATGATAACGCTGTTCTTGTGACGTGCGGCTATAAAGTGTCCAGAGAACTGTATTTGCctatttattttacagattacGCGGTGTTCTACGTTATCCCGCTCTTGTTAGCCACTGTTTTATACGGGTTGATCGCAAGAATCCTTTTCCTCAACCCACTCCCGTCGGATCCCAAGGAAAGTCGAAGAAATTGGAAGAAGGAGTCGTCTGTGCACGGGAACTCCAGGAGTTCATCCAACAGCACGACTGTGGCTTCTCGGAGACAGGTGACGAAGATGCTGGCGGTGGTGGTGATCCTCTTCGCTCTGCTCTGGATGCCATACCGGACGTTAGTGGTGGTCAACTCCTTCCTCAAGGAAGCCTATCTGGACACCTGTTTCCTTCTGTTCTGCCGTCTCTGCATCTACATGAACAGCGCCATCAACCCCATCATCTACAACGCCATGTCACAGAAGTTTCGCGCCGCCTTCCACAAACTATGCCACTGCAGGCCTCAGCGCTCAGAAAAGCCCCCGGCGTACAGCGTGGCCCTCACATACAGCGTCATCAAGGAGACATCCAACGGAGAGAGTCCAGACCACTACACCACTGAGCTGGACGACATCCGGGGGGCCGCAGAAGATCTGCTGCCCGAGCGGAAGAGGCTGTGCTTTAAAGAGCCTGCTAAAGACACACTGGCAACAGCTTGACACGGTCAGATGAGGTTGTTTCATTTGTAGTGTTTCACAGTGCTGCTGAGTGAAA
>TCONS_00020111
ATGGAGAACGGCACTTTCAGCAACGGGACTTGGACTGATAACAGTGTCGAATACAAGGTGGTGAGCATCCTATTAGTGATCCTTATTTGTGGAGTTGGAATTGTTGGGAATGTTATGGTCATTCTTGTGGTCTTGACGACCAAGCACATGCGTACCCCGACTAACTGTTACTTGGTGAGCCTAGCAGTTGCCGATCTCATGGTTTTAACCGCAGCCGGGCTGCCCAACATCACCGAGATCCTGTTCGGCGGTCAGTGGGTGTACGGCTACGCCGGGTGCCTCTCCATCACTTATTTCCAGTATCTGGGCATCAACGCGTCCTCCTGCTCCATCACAGCCTTCACCATCGAACGCTACATAGCAATTTGCCACCCGATAAAAGCGCAGTTCATGTGCACCCTCTCCAGAGCCAAGAAAATCATTGTGCTCGTCTGGGTCTTGACGTCCCTCTATTGCGTTATGTGGTTTTATCTGCTGGACACGAGGGAGAAAGTTTATGATAACGCTGTTCTTGTGACGTGCGGCTATAAAGTGTCCAGAGAACTGTATTTGCctatttattttacagattacGCGGTGTTCTACGTTATCCCGCTCTTGTTAGCCACTGTTTTATACGGGTTGATCGCAAGAATCCTTTTCCTCAACCCACTCCCGTCGGATCCCAAGGAAAGTCGAAGAAATTGGAAGAAGGAGTCCACGACTGTGGCTTCTCGGAGACAGGTGACGAAGATGCTGGCGGTGGTGGTGATCCTCTTCGCTCTGCTCTGGATGCCATACCGGACGTTAGTGGTGGTCAACTCCTTCCTCAAGGAAGCCTATCTGGACACCTGTTTCCTTCTGTTCTGCCGTCTCTGCATCTACATGAACAGCGCCATCAACCCCATCATCTACAACGCCATGTCACAGAAGTTTCGCGCCGCCTTCCACAAACTATGCCACTGCAGGCCTCAGCGCTCAGAAAAGCCCCCGGCGTACAGCGTGGCCCTCACATACAGCGTCATCAAGGAGACATCCAACGGAGAGAGTCCAGACCACTACACCACTGAGCTGGACGACATCCGGGGGGCCGCAGAAGATCTGCTGCCCGAGCGGAAGAGGCTGTGCTTTAAAGAGCCTGCTAAAGACACACTGGCAACAGCTTGA
>TCONS_00020112
ATGGAGAACGGCACTTTCAGCAACGGGACTTGGACTGATAACAGTGTCGAATACAAGGTGGTGAGCATCCTATTAGTGATCCTTATTTGTGGAGTTGGAATTGTTGGGAATGTTATGGTCATTCTTGTGGTCTTGACGACCAAGCACATGCGTACCCCGACTAACTGTTACTTGGTGAGCCTAGCAGTTGCCGATCTCATGGTTTTAACCGCAGCCGGGCTGCCCAACATCACCGAGATCCTGTTCGGCGGTCAGTGGGTGTACGGCTACGCCGGGTGCCTCTCCATCACTTATTTCCAGTATCTGGGCATCAACGCGTCCTCCTGCTCCATCACAGCCTTCACCATCGAACGCTACATAGCAATTTGCCACCCGATAAAAGCGCAGTTCATGTGCACCCTCTCCAGAGCCAAGAAAATCATTGTGCTCGTCTGGGTCTTGACGTCCCTCTATTGCGTTATGTGGTTTTATCTGCTGGACACGAGGGAGAAAGTTTATGATAACGCTGTTCTTGTGACGTGCGGCTATAAAGTGTCCAGAGAACTGTATTTGCctatttattttacagattacGCGGTGTTCTACGTTATCCCGCTCTTGTTAGCCACTGTTTTATACGGGTTGATCGCAAGAATCCTTTTCCTCAACCCACTCCCGTCGGATCCCAAGGAAAGTCGAAGAAATTGGAAGAAGGAGTCGTCTGTGCACGGGAACTCCAGGAGTTCATCCAACAGCACGACTGTGGCTTCTCGGAGACAGGTGACGAAGATGCTGGCGGTGGTGGTGATCCTCTTCGCTCTGCTCTGGATGCCATACCGGACGTTAGTGGTGGTCAACTCCTTCCTCAAGGAAGCCTATCTGGACACCTGTTTCCTTCTGTTCTGCCGTCTCTGCATCTACATGAACAGCGCCATCAACCCCATCATCTACAACGCCATGTCACAGAAGTTTCGCGCCGCCTTCCACAAACTATGCCACTGCAGGCCTCAGCGCTCAGAAAAGCCCCCGGCGTACAGCGTGGCCCTCACATACAGCGTCATCAAGGAGACATCCAACGGAGAGAGTCCAGACCACTACACCACTGAGCTGGACGACATCCGGGGGGCCGCAGAAGATCTGCTGCCCGAGCGGAAGAGGCTGTttttACTAGGCAGGATAGGCTAA

Function

symbol description
trhra Predicted to enable thyrotropin-releasing hormone receptor activity. Predicted to be involved in phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital nongoitrous hypothyroidism 7 and hypertension. Orthologous to human TRHR (thyrotropin releasing hormone receptor).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-18 Predicted to enable thyrotropin-releasing hormone receptor activity. Predicted to be involved in phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital nongoitrous hypothyroidism 7 and hypertension. Orthologous to human TRHR (thyrotropin releasing hormone receptor).

Ensembl:

ensembl_id ENSDARG00000076546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020109 False 1194 mRNA 0.52 3 38818864 38825024
TCONS_00020110 False 1411 mRNA 0.50 2 38820486 38825079
TCONS_00020111 False 1146 mRNA 0.52 3 38820660 38825024
TCONS_00020112 True 1164 mRNA 0.52 3 38820660 38826777

Neighbor

gene id symbol gene type direction distance location
XLOC_010134 NA coding upstream 84922 38731787 ~ 38733942 (+)
XLOC_010133 emc2 coding upstream 89258 38659475 ~ 38729606 (+)
XLOC_010132 cd83 coding upstream 421505 38394371 ~ 38397359 (+)
XLOC_010131 zgc:113232 coding upstream 428981 38360002 ~ 38389883 (+)
XLOC_010130 elp6 coding upstream 459227 38350704 ~ 38359637 (+)
XLOC_010136 eny2 coding downstream 113981 38940758 ~ 38943685 (+)
XLOC_010137 sybu coding downstream 319919 39146696 ~ 39168840 (+)
XLOC_010138 zdhhc3a coding downstream 369950 39196727 ~ 39233451 (+)
XLOC_010139 zgc:77056 coding downstream 415562 39242339 ~ 39246079 (+)
XLOC_010140 osbpl10b coding downstream 444346 39271123 ~ 39386073 (+)
XLOC_010122 CT025591.1 non-coding upstream 797730 38021019 ~ 38021134 (+)
XLOC_010119 BX294107.1 non-coding upstream 1047264 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 1105227 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 1158253 37659520 ~ 37660611 (+)
XLOC_010142 NA non-coding downstream 797347 39624124 ~ 39627370 (+)
XLOC_010143 NA non-coding downstream 800936 39627713 ~ 39628196 (+)
XLOC_010144 NA non-coding downstream 804833 39631610 ~ 39632068 (+)
XLOC_010145 NA non-coding downstream 1030408 39857185 ~ 39901940 (+)
XLOC_010146 NA non-coding downstream 1125580 39952357 ~ 39966375 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_01396291_01399075 TRHRA coding CI01000016 null 1394715 ~ 1400954 (-)