G247969


Basic Information

Item Value
gene id G247969
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2003297 ~ 2056291 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281452
CTACATACATATACATACAGGGTTCCTACGCAGTTTGGAAAAGTATGGAATTTGATTTGAGTAATTTCCAGATCTGGAAAAGTGTGGAAAAAAGAAATCAGAGAATGGAAAAATATTTGTTTCCAGACTATTGACTCCATTCAGTTTTCTAATTTATCATACATGCAAACTAGTCACTTTACAGCGAAATTAGCCCTTTTGAATCAAAATACATAATTTATGTGAATCGTGTAGATCCGAAGAGGGTTTTTTTTTTCGGGGCGAGTGTGTGTGTGTGTGTGTGTGTCACAGGATTCTCACAAGATTCAAAAATGGGCTACTTTCCCATAGACTGGAGTGACTCGTGATCTTTCTTGGTGCTCTGTGGTGTGATAGATCGCTTTAGCGCTCGTGAACCAACCATCTCTTCTGCTTTACTAGTTACAACACAAAATAAACATAAATGAACATCCGAAGGTATGTTGAAAGATAGAGTACAACTTACCGAAATCCGTATCATGTCACATCGATCAATCAGTGTTTCAAACGCAAAAAGGCGTTAATAAAACAGCTTGTAAAAATGTCACATTTATCCTACCTAAGAAAAGCCGTTCAATGTCCAAAAACTCATTAGTCAGCTACAAAAATTAACTTAGAGAGGAGCATTTTGCTAAATATATGCACTATAGGCTATTGCATATTCATTGTATTTGTACTTAACATGTGCTTCAATATTGAATGTATAAATCTGTTTCATGACAGCCACCATTTAAATGTTTAGGCCTATATAAAAAAAAAAATAATAATAATAATAATTGTCATTAAAAATTTATAAAAACGTCCTTATGTGTAATTTAGCCTATATGTAAGTAGCTTACATATTAATTTTAACCTTTAATAATATAATGATGTACCAGCTGTGGTTCCCTGTATGGTTTACAGCATTAGTTGAGAGATTTTTTTCTTTGAGGAAATTTGCCATGCACTTTACCTGATAGGCCCCAAATTAATCAATATTGAATCAAAGGTAATCAAATCAAATCGCAAGCTTCTGAATCAAAATTACATTCAATTGTGAAATTTGTCAATGCTCAGCCCTACTGCCAATAATTTATTATTATTATTATTATTATTATTATTATTATTTTTACTTGAAGCAAATGTTGTTTTTTTCCATTTATGTTCTTGTCAGAGTGCACCAGAATGCTTAGTTTACATGTTAAAATCACAAAAATCTTCTCCTGGGGGAGGATGCCCCCAAACCCCCTACGACAACTTAGTTCCTGCACATCACCTTTTACACCTCTTTTGACTTTGCTGATGTTTATAAACTTAAGAATTTCTAAAATATTAGGGAAACTGATACTGCGCTTGTGTAGGCTACTCGTACTTGTGGGCTACTCTATAAAATGCTTCGACACCAACAACAAATACCAACAACAGAGCAAACACAGAGCAGAATGGATAAATCAGAGAAGGATGTCTATGAAGTAAATGTATCGAATAATTAGAATGTTAAACAAATTAAATATTTATGCCTATGTAGCAAGTGGTATGGTCGGAAAGGGAAACAAACGAAGTCACTACGCCACCCTGTTAAACAGGGAATATATTAGTACTTGTAGATTAATCCCCAACAAAAGTCACACAGGTACGTGATTTTAAGAAGAGAAGGGCCTAGACGTGAAAACTAAATACCAAACTTTATTTTAACAATCAAACACTAATTTAAAAATCACTAAAAGACTGTAAGACCCGGACTACAAACAAGAAGCAGAGAAAACATAGAAAAGGAGACCGAGGCTTACCAATGGCAGAAAATTGTTTGGAAGGAGGTCTGGAAATTTGAGTCTGGAAAAGTATGGAATTTTGAAATGGAACATGTGTAGGAACCCTGTATATATCAAATTAAAAAAGATATATCTTATATTGCAATAATATAAGCTATTATACTGTAAAATTGAAAAAGCATATATTTAATAATCATGATAACATATTATATAATACAATATGTTATAATAAAATTAATAAATTATTAACAATGTTAATAATTATTTTATTTTTATTGTTTTATTGTCATTCTCAACACCATGCATTGTTAAATTCATAAAGTTACCAGGCAACTGGCAAGTAACACAATTTTTTATTTTTATTTTTATTCTCATTTGGCGTTTTGAACTTTGGCTAATATGCTATTAGTGTCCCGCAGATGGCACCGCGAGATCGTTTAGCACTGTTGCAATCCATGTATCCATGCATGAAATAAATGCATTAGAAAACGTAACTTTTTGCTGGCCATTTCATGATTTCAGTCATCATACAATAGCCAGCACCCACCCACAACCATTTTTTTCCTTGGATTTACGCAATTCACGTGAGTCATACTTTTCAGGGTGGAAAATACAGAAATCAGCATAAATACGGAAAAATCGCATCCCCGAGTGTTGTAAGAGGTGCCAGAAGCAAAATGTTCGCATCATAGTAGTGTTACTTAGAAAGACAAAAATACACTTCAAAGCTCTAAATATTATCCAAATTAAACGTTATTTTTAATATGGTGACAAAAACAAAAATCCCTATAAAAATTAGGTTTTTACATGTTACTGTTGTTGATAAAAGTTAATTTTATCTGCATCTCAACTCAAGCTCAGTGCTTTACTGTCAAATGTGCATTTCCAAGAAATAAACATGTTATATTATTAGTTACTGCACTTATTAATGCAAAATAATAGTAATGTTATGATTAAATTACCTTTATGATTACAAATCCCTCCAGTGCTACCAGATCAGGTTCTGGTGCCACTATCTGTAGAACTTATTGGCAACATTGCTACTGCTCTCAATTGTTAGTCTGGAACCCTGCTTTAAGAGTAAATGTAGAGTAAGGCTGTTAGTGAAGGGTGCATGTGACTGAAGTAATTTTTCTGTTTACTTTTTCTACTTTTTAGGTATAATTTATTTTAATTTCAGTTTTAGTATTTGAATAAACAAAAAAATATTCTGAATAGTTTTAGTTGCAATAATAAACAATAATTGCCCTGTTTCAAATACACTATAACACAAATAGGCAATATTCAAAGTTTTATTTTCAACCCATAGTTTATATATATATATATATATATATATATATATATATATACTCGGAGTGAGTAGGGATCATAGCAATGCTCACTTTCCTATGGAATTTTCCTTCTTTCTCTCTTCTCCTGGCTCACTCTTTCTTTTTAACACCAGCCCTCTCCCTCTTTTCACAACTGCTTTCACACACTCGCTCACACTTTTCTCTTTGTCTTTCTCTCTCTCTCTCTCTCTCTCCTTCCTTTTGCAGCCCCACTTTTGTCTCTCTCTCATCACACCTTGTGTCTTCTGCTCTGACACGTTATACTCTCTCCATCTCTCTTCATTGATATTCTAGAAGGAACTATCAGTCAAGAGCTGTTTTTTTTTTCCCCCTGCCTTCCTTATTTAGGTTGCCTTTTGCATTACACATTTGAAAGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281452 True 3515 lncRNA 0.33 2 2003297 2056291

Neighbor

gene id symbol gene type direction distance location
CI01000058_01838039_01842964 NA coding upstream 160067 1838039 ~ 1843230 (+)
CI01000058_01794468_01800421 KISS1 coding upstream 202876 1794468 ~ 1800421 (+)
CI01000058_01740599_01784355 PLEKHA6 coding upstream 218621 1740599 ~ 1784676 (+)
CI01000058_01625351_01664692 PIK3C2B coding upstream 337503 1625351 ~ 1665794 (+)
CI01000058_01580247_01591754 NA coding upstream 411044 1579663 ~ 1592253 (+)
CI01000058_02227590_02229507 MYOG coding downstream 171127 2227418 ~ 2230021 (+)
CI01000058_02348646_02354404 TMEM183A coding downstream 292324 2348615 ~ 2355085 (+)
CI01000058_02379628_02392648 NA coding downstream 322293 2378584 ~ 2392780 (+)
CI01000058_02578534_02589495 NA coding downstream 521770 2578061 ~ 2590541 (+)
CI01000058_02592534_02600835 NA coding downstream 534902 2591193 ~ 2601755 (+)
G247991 NA non-coding upstream 130 1998870 ~ 2003167 (+)
G247950 NA non-coding upstream 62029 1927222 ~ 1941268 (+)
G247977 NA non-coding upstream 76265 1881180 ~ 1927032 (+)
G248152 NA non-coding upstream 126115 1876979 ~ 1877182 (+)
G248140 NA non-coding upstream 143317 1859734 ~ 1859980 (+)
CI01000058_02052152_02085378 NA non-coding downstream 2751 2051963 ~ 2085455 (+)
G248208 NA non-coding downstream 33966 2090257 ~ 2092730 (+)
G248303 NA non-coding downstream 180619 2236910 ~ 2237958 (+)
G248356 NA non-coding downstream 260927 2317218 ~ 2321912 (+)
G248372 NA non-coding downstream 342395 2398686 ~ 2398891 (+)
G247940 NA other upstream 546850 1452997 ~ 1456447 (+)
CI01000058_01280337_01289153 DNASE2B other upstream 715027 1278592 ~ 1289874 (+)
CI01000058_00592498_00596709 NA other upstream 1406126 592331 ~ 597171 (+)
CI01000058_00435196_00437830 AGTRAP other upstream 1547553 434913 ~ 455744 (+)
G250039 NA other downstream 2638117 4694408 ~ 4697161 (+)
CI01000058_04864571_04888198 NA other downstream 2770085 4864571 ~ 4888216 (+)

Expression


Co-expression Network