XLOC_010138 (zdhhc3a)


Basic Information

Item Value
gene id XLOC_010138
gene name zdhhc3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39196727 ~ 39233451 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020119
agaagtGGCTTTCGTGTCGGATCGTGATCCGGTTGCGCCTCCAGTGAAGGGAGGAGTGGTTATCAGTTTCTCCAGTGAAGGGAGGAGCTGCCACCGCACAAAAATGCAGCATTTCACCAGTCCATGTGCAATATTCGGgtaaaactgatttatttgcTAAAACACTAATCTGGAGCGTGTCCCCCAGTTAGTGTGATCCATGCGTTATTGGATCTTCTCGGCCTGGGTTAGGCGAACAAACGCGAGGAGCACCAGTGTCGCCAAATATGATGGCATCTCTGTGGTAGGATGAGAAGTCCAGTGCCGCGCTTCAGGGACGTCGAGAGGCAGGCCAGTGGCCTTCAGCCCCCACAGTGTCTTCCTTCCTGTCATGAGCGTCAGAGCAGCATGTGGTTCATCAAAGACGCCTGTGGTATCGTGTGTGCGATCATCACCTGGTTTCTCGTCTTCTTCGCTGAGTTCGTTGTGCTGTTCGTCATGCTGATTCCATCCAAAAACCTCACATACAGCCTGGTGAACGGCACCCTGTTCAACAGCCTGGCCTTCCTCGCCTTGGCCTCGCATTTCAGAGCCATGTGCACCGACCCTGGAGCTGTGCCAAAGGGCAATGCCACCAAGGAGTACATCGAGAGTTTGCAGCTGAAGCCAGGCCAGGTGGTTTACAAATGTCCCAAGTGCTGCAGTATTAAGCCGGATAGAGCTCACCACTGCAGTGTTTGTAAGCGCTGTATACGCAAGATGGATCATCATTGCCCTTGGGTTAACAATTGTGTCGGGGAAAATAACCAGAAGTACTTTGTGCTTTTCACAATGTACATTTGCCTGATCTCCCTGCATTCCTTGGTCATGGTGGTTTTTCATTTCCTCAACTGCTTTGAAGATGACTGGACAAAGTGCAGTACCTTCTCCCCTCCTGCCACCgtcatcctcctcatcctcctgTGCTTTGAGGGCCTCCTCTTCCTCATCTTCACCTCTGTGATGTTTGGCACCCAAGTCCATTCCATCTGCACAGATGAGACGGGCATCGAAAAGCTGAAGCGTGAAGACCCCACATGGGAGAAGACTCAGTGCTGGGAAGGAATGAAGTCTGCATTTGGAGGTCCTCTTTCTGTGACCTGGTTCAGTCCTTTCACGGATTTGTCATGCCAGAAAGACGATTCATCTCCGGTGCCCATGTTCCCACAAGGAGAGATTATTGAGGAGGACGTGATCGAGATTCCTTTGGAGCCTCATTAGATCAAAATGTGACCCTGAGGACTTACATTGCACATTTTTACCATTGAACCACTGTGAACATTTTGAATTTTACCCATAGAAATAACATCTATGTACTTTACCAAAGTGCCTTAAAGCAGTATTTACAACCAAAAACACATAACGCTCTTCTTAAGATTAACTTATGCATAGAGACTGAGCTCATGTACTGTGACATGTTTGATTATATGCACTGTTCCTGGAGCAGTGATGTCTTTAGTTGGGTTAATCTGATCAGTTGAGTCTAGAATCTTAAAGTTTTTGGTAACTAAGTGAATCCTTTCCTATCGAACactacccagcaagcattttctttttgttgtttttaaaagatgtctaatagatgtctgatagacatctaaacatagtcatcttggctaaaacaaggctaaattggGGCTGTCAGTCAAAATTTAATAGACgtttaagaataggccaaaactaatCTGCaatctaatctgtctatttgacgactggTCTAGCCAAGCCGTCTACGTTTAGATATcggtttagacgtctattaaacactaaATTGTTTGCTGGATTTTTAGTTTATCTCTGTTTAATATGCAGCtgtggagaaaaagaaaaaaacaagacacTCTGAGCTTCTCTGGGTTTTCTTGTTATGTGTTTGACTAaactgtttatatttgtttaatttcataaAGGGCTGATATTATGTCTTCCTAATTTCAAATAAACCATTTTGTCTTTT

Function

symbol description
zdhhc3a Enables S-acyltransferase activity. Involved in peptidyl-L-cysteine S-palmitoylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC3 (zinc finger DHHC-type palmitoyltransferase 3).

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0019705 protein-cysteine S-myristoyltransferase activity molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-484 Enables S-acyltransferase activity. Involved in peptidyl-L-cysteine S-palmitoylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC3 (zinc finger DHHC-type palmitoyltransferase 3).

Ensembl:

ensembl_id ENSDARG00000010981

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020119 True 1975 mRNA 0.45 7 39196727 39233451

Neighbor

gene id symbol gene type direction distance location
XLOC_010137 sybu coding upstream 27887 39146696 ~ 39168840 (+)
XLOC_010136 eny2 coding upstream 253042 38940758 ~ 38943685 (+)
XLOC_010135 trhra coding upstream 369950 38818864 ~ 38826777 (+)
XLOC_010134 NA coding upstream 462785 38731787 ~ 38733942 (+)
XLOC_010133 emc2 coding upstream 467121 38659475 ~ 38729606 (+)
XLOC_010139 zgc:77056 coding downstream 8888 39242339 ~ 39246079 (+)
XLOC_010140 osbpl10b coding downstream 37672 39271123 ~ 39386073 (+)
XLOC_010141 CR855318.1 coding downstream 252157 39485608 ~ 39583668 (+)
XLOC_010142 NA coding downstream 390673 39624124 ~ 39627370 (+)
XLOC_010143 NA coding downstream 394262 39627713 ~ 39628196 (+)
XLOC_010122 CT025591.1 non-coding upstream 1175593 38021019 ~ 38021134 (+)
XLOC_010119 BX294107.1 non-coding upstream 1425127 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 1483090 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 1536116 37659520 ~ 37660611 (+)
XLOC_010144 NA non-coding downstream 398159 39631610 ~ 39632068 (+)
XLOC_010145 NA non-coding downstream 623734 39857185 ~ 39901940 (+)
XLOC_010146 NA non-coding downstream 718906 39952357 ~ 39966375 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_01202843_01213613 ZDHHC3B, ZDHHC3, ZDHHC3A, MGC82349 coding CI01000016 null 1201258 ~ 1213613 (-)